RNA–Protein interactions for RNA: ENST00000495619.1

NCKAP1-208, Transcript of NCK associated protein 1, humanhuman

TSL 3

Gene NCKAP1, Length 665 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKAP1-208ENST00000495619 AEBP2Q6ZN18 517 aaPredicted RBP29.49■■■□□ 2.31
NCKAP1-208ENST00000495619 CHIC1Q5VXU3 224 aa28.86■■■□□ 2.21
NCKAP1-208ENST00000495619 PHF23Q9BUL5 403 aaPredicted RBP25.26■■□□□ 1.63
NCKAP1-208ENST00000495619 SENP3Q9H4L4 574 aaPredicted RBP25.26■■□□□ 1.63
NCKAP1-208ENST00000495619 PLPPR3Q6T4P5 718 aa23.5■■□□□ 1.35
NCKAP1-208ENST00000495619 FOXD1Q16676 465 aa23.32■■□□□ 1.32
NCKAP1-208ENST00000495619 ADRA2BP18089 450 aa22.34■■□□□ 1.17
NCKAP1-208ENST00000495619 PPP6R1Q9UPN7 881 aa22.31■■□□□ 1.16
NCKAP1-208ENST00000495619 PIAS4Q8N2W9 510 aaPredicted RBP22.06■■□□□ 1.12
NCKAP1-208ENST00000495619 MSH5O43196 834 aa21.7■■□□□ 1.06
NCKAP1-208ENST00000495619 SCAF1Q9H7N4 1312 aaKnown RBP20.7■□□□□ 0.9
NCKAP1-208ENST00000495619 PPP4R3CPQ6ZMV5 832 aa20.63■□□□□ 0.89
NCKAP1-208ENST00000495619 MAPK8IP2Q13387 824 aaPredicted RBP20.26■□□□□ 0.83
NCKAP1-208ENST00000495619 NCBP3Q53F19 620 aaKnown RBP20.22■□□□□ 0.83
NCKAP1-208ENST00000495619 CNKSR2Q8WXI2 1034 aa20.12■□□□□ 0.81
NCKAP1-208ENST00000495619 DMRT2Q9Y5R5 561 aa20.08■□□□□ 0.81
NCKAP1-208ENST00000495619 KCNA4P22459 653 aa19.99■□□□□ 0.79
NCKAP1-208ENST00000495619 POTEDQ86YR6 584 aa19.76■□□□□ 0.75
NCKAP1-208ENST00000495619 RNF216Q9NWF9 866 aaPredicted RBP19.74■□□□□ 0.75
NCKAP1-208ENST00000495619 NPM3O75607 178 aaKnown RBP19.73■□□□□ 0.75
NCKAP1-208ENST00000495619 HOXD11P31277 338 aaPredicted RBP19.63■□□□□ 0.73
NCKAP1-208ENST00000495619 DCAF8L1A6NGE4 600 aa19.31■□□□□ 0.68
NCKAP1-208ENST00000495619 DNAJC5BQ9UF47 199 aa19.21■□□□□ 0.67
NCKAP1-208ENST00000495619 SLC4A1APQ9BWU0 796 aaKnown RBP19.13■□□□□ 0.65
NCKAP1-208ENST00000495619 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.81■□□□□ 0.6
NCKAP1-208ENST00000495619 SLC4A2P04920 1241 aa18.59■□□□□ 0.57
NCKAP1-208ENST00000495619 FOXD4L1Q9NU39 408 aa18.52■□□□□ 0.56
NCKAP1-208ENST00000495619 RNF39Q9H2S5 420 aa18.48■□□□□ 0.55
NCKAP1-208ENST00000495619 EHMT2Q96KQ7 1210 aa18.44■□□□□ 0.54
NCKAP1-208ENST00000495619 U3KPZ7 1027 aaPredicted RBP18.36■□□□□ 0.53
NCKAP1-208ENST00000495619 C1QBPQ07021 282 aaKnown RBP18.35■□□□□ 0.53
NCKAP1-208ENST00000495619 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.33■□□□□ 0.52
NCKAP1-208ENST00000495619 MYCNP04198 464 aaPredicted RBP18.33■□□□□ 0.52
NCKAP1-208ENST00000495619 HNRNPUL2Q1KMD3 747 aaKnown RBP18.33■□□□□ 0.52
NCKAP1-208ENST00000495619 ZBTB22O15209 634 aa18.3■□□□□ 0.52
NCKAP1-208ENST00000495619 APLP2Q06481 763 aa18.22■□□□□ 0.51
NCKAP1-208ENST00000495619 CSRNP3Q8WYN3 585 aa18.21■□□□□ 0.51
NCKAP1-208ENST00000495619 SAMD1Q6SPF0 538 aaPredicted RBP18.2■□□□□ 0.5
NCKAP1-208ENST00000495619 CACNB1Q02641 598 aaPredicted RBP18.15■□□□□ 0.5
NCKAP1-208ENST00000495619 ATXN8OSP0DMR3 200 aa17.94■□□□□ 0.46
NCKAP1-208ENST00000495619 CAPN15O75808 1086 aa17.93■□□□□ 0.46
NCKAP1-208ENST00000495619 SPINK5Q9NQ38 1064 aaPredicted RBP17.85■□□□□ 0.45
NCKAP1-208ENST00000495619 ZNF219Q9P2Y4 722 aaPredicted RBP17.85■□□□□ 0.45
NCKAP1-208ENST00000495619 TRHP20396 242 aaPredicted RBP17.79■□□□□ 0.44
NCKAP1-208ENST00000495619 ATF5Q9Y2D1 282 aaPredicted RBP17.66■□□□□ 0.42
NCKAP1-208ENST00000495619 DSG3P32926 999 aa17.55■□□□□ 0.4
NCKAP1-208ENST00000495619 ABCB7O75027 752 aa17.49■□□□□ 0.39
NCKAP1-208ENST00000495619 POLA2Q14181 598 aa17.47■□□□□ 0.39
NCKAP1-208ENST00000495619 ZBTB12Q9Y330 459 aaPredicted RBP17.32■□□□□ 0.36
NCKAP1-208ENST00000495619 FBLN2P98095 1184 aa17.19■□□□□ 0.34
NCKAP1-208ENST00000495619 MKRN4PQ13434 485 aaPredicted RBP16.91■□□□□ 0.3
NCKAP1-208ENST00000495619 RBM42Q9BTD8 480 aaKnown RBP16.89■□□□□ 0.29
NCKAP1-208ENST00000495619 OSCARQ8IYS5 282 aa16.83■□□□□ 0.28
NCKAP1-208ENST00000495619 SPDYE2BA6NHP3 402 aa16.76■□□□□ 0.27
NCKAP1-208ENST00000495619 SPDYE6P0CI01 402 aa16.76■□□□□ 0.27
NCKAP1-208ENST00000495619 SPDYE2Q495Y8 402 aa16.76■□□□□ 0.27
NCKAP1-208ENST00000495619 ZNF692Q9BU19 519 aaPredicted RBP16.68■□□□□ 0.26
NCKAP1-208ENST00000495619 SPDYE4A6NLX3 237 aa16.64■□□□□ 0.25
NCKAP1-208ENST00000495619 AKT1S1Q96B36 256 aa16.6■□□□□ 0.25
NCKAP1-208ENST00000495619 FKBP8Q14318 412 aa16.55■□□□□ 0.24
NCKAP1-208ENST00000495619 SSUH2Q9Y2M2 353 aa16.53■□□□□ 0.24
NCKAP1-208ENST00000495619 PABPN1Q86U42 306 aaKnown RBP eCLIP16.42■□□□□ 0.22
NCKAP1-208ENST00000495619 REM2Q8IYK8 340 aaPredicted RBP16.38■□□□□ 0.21
NCKAP1-208ENST00000495619 SPDYE1Q8NFV5 336 aaPredicted RBP16.31■□□□□ 0.2
NCKAP1-208ENST00000495619 STAG3Q9UJ98 1225 aa16.26■□□□□ 0.19
NCKAP1-208ENST00000495619 PROM2Q8N271 834 aa16.25■□□□□ 0.19
NCKAP1-208ENST00000495619 CLEC11AQ9Y240 323 aa16.22■□□□□ 0.19
NCKAP1-208ENST00000495619 PITPNM1O00562 1244 aa16.17■□□□□ 0.18
NCKAP1-208ENST00000495619 FBXO3Q9UK99 471 aa16.13■□□□□ 0.17
NCKAP1-208ENST00000495619 CHRDL2Q6WN34 429 aa16.12■□□□□ 0.17
NCKAP1-208ENST00000495619 PRR29P0C7W0 189 aa16.08■□□□□ 0.16
NCKAP1-208ENST00000495619 PLEKHG5O94827 1062 aa15.91■□□□□ 0.14
NCKAP1-208ENST00000495619 FXR2P51116 673 aaKnown RBP eCLIP15.88■□□□□ 0.131e-8■■□□□ 12.9
NCKAP1-208ENST00000495619 MIER1Q8N108 512 aa15.85■□□□□ 0.13
NCKAP1-208ENST00000495619 PIP4P2Q8N4L2 257 aa15.85■□□□□ 0.13
NCKAP1-208ENST00000495619 PLCD3Q8N3E9 789 aa15.83■□□□□ 0.12
NCKAP1-208ENST00000495619 PRKAR2AP13861 404 aaKnown RBP15.81■□□□□ 0.12
NCKAP1-208ENST00000495619 VASPP50552 380 aaPredicted RBP15.78■□□□□ 0.12
NCKAP1-208ENST00000495619 ZBTB47Q9UFB7 747 aaPredicted RBP15.74■□□□□ 0.11
NCKAP1-208ENST00000495619 CREBZFQ9NS37 354 aa15.73■□□□□ 0.11
NCKAP1-208ENST00000495619 CHADLQ6NUI6 762 aa15.72■□□□□ 0.11
NCKAP1-208ENST00000495619 POTEHQ6S545 545 aa15.69■□□□□ 0.1
NCKAP1-208ENST00000495619 NPM1P06748 294 aaKnown RBP eCLIP15.65■□□□□ 0.1
NCKAP1-208ENST00000495619 KLHL34Q8N239 644 aa15.64■□□□□ 0.09
NCKAP1-208ENST00000495619 FARP1Q9Y4F1 1045 aaPredicted RBP15.63■□□□□ 0.09
NCKAP1-208ENST00000495619 MNX1P50219 401 aaPredicted RBP15.51■□□□□ 0.07
NCKAP1-208ENST00000495619 IFNLR1Q8IU57 520 aaPredicted RBP15.49■□□□□ 0.07
NCKAP1-208ENST00000495619 HAX1O00165 279 aa15.46■□□□□ 0.07
NCKAP1-208ENST00000495619 PAK3O75914 559 aaPredicted RBP15.44■□□□□ 0.06
NCKAP1-208ENST00000495619 SPOCK2Q92563 424 aa15.44■□□□□ 0.06
NCKAP1-208ENST00000495619 CD44P16070 742 aaKnown RBP15.37■□□□□ 0.05
NCKAP1-208ENST00000495619 C19orf67A6NJJ6 358 aa15.35■□□□□ 0.05
NCKAP1-208ENST00000495619 FAM212AQ96EL1 285 aa15.34■□□□□ 0.05
NCKAP1-208ENST00000495619 NUBP1P53384 320 aa15.32■□□□□ 0.04
NCKAP1-208ENST00000495619 GSE1Q14687 1217 aa15.29■□□□□ 0.04
NCKAP1-208ENST00000495619 DCAF8Q5TAQ9 597 aa15.28■□□□□ 0.04
NCKAP1-208ENST00000495619 TSPYL2Q9H2G4 693 aaPredicted RBP15.28■□□□□ 0.04
NCKAP1-208ENST00000495619 RASEFQ8IZ41 740 aa15.27■□□□□ 0.04
NCKAP1-208ENST00000495619 ZRANB1Q9UGI0 708 aa15.27■□□□□ 0.04
NCKAP1-208ENST00000495619 CIZ1Q9ULV3 898 aaPredicted RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms