Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC093752.3-201ENST00000567343 901 ntBASIC16.83■□□□□ 0.28
HMGB1P09429 AL008721.1-201ENST00000609964 604 ntBASIC16.83■□□□□ 0.28
HMGB1P09429 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC16.83■□□□□ 0.28
HMGB1P09429 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC16.83■□□□□ 0.28
HMGB1P09429 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGB1P09429 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
HMGB1P09429 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGB1P09429 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGB1P09429 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGB1P09429 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC16.82■□□□□ 0.28
HMGB1P09429 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB1P09429 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB1P09429 AC073548.1-201ENST00000624088 1882 ntBASIC16.82■□□□□ 0.28
HMGB1P09429 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC16.82■□□□□ 0.28
HMGB1P09429 MARK2P9-201ENST00000430958 1727 ntBASIC16.82■□□□□ 0.28
HMGB1P09429 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB1P09429 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB1P09429 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB1P09429 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB1P09429 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB1P09429 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB1P09429 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB1P09429 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB1P09429 RN7SKP214-201ENST00000364208 315 ntBASIC16.82■□□□□ 0.28
HMGB1P09429 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB1P09429 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
HMGB1P09429 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB1P09429 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC16.82■□□□□ 0.28
HMGB1P09429 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC16.82■□□□□ 0.28
HMGB1P09429 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC16.82■□□□□ 0.28
HMGB1P09429 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC16.82■□□□□ 0.28
HMGB1P09429 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC16.82■□□□□ 0.28
HMGB1P09429 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC16.82■□□□□ 0.28
HMGB1P09429 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC16.82■□□□□ 0.28
HMGB1P09429 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC16.82■□□□□ 0.28
HMGB1P09429 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HMGB1P09429 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC16.82■□□□□ 0.28
HMGB1P09429 AC007326.2-201ENST00000624224 7579 ntBASIC16.82■□□□□ 0.28
HMGB1P09429 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC16.82■□□□□ 0.28
HMGB1P09429 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB1P09429 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB1P09429 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC16.82■□□□□ 0.28
HMGB1P09429 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB1P09429 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB1P09429 CICP4-201ENST00000447359 2812 ntBASIC16.82■□□□□ 0.28
HMGB1P09429 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB1P09429 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB1P09429 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HMGB1P09429 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
HMGB1P09429 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
HMGB1P09429 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB1P09429 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGB1P09429 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB1P09429 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGB1P09429 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB1P09429 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC16.81■□□□□ 0.28
HMGB1P09429 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB1P09429 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB1P09429 DUT-208ENST00000559540 1441 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGB1P09429 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB1P09429 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
HMGB1P09429 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGB1P09429 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB1P09429 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB1P09429 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB1P09429 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB1P09429 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB1P09429 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB1P09429 HNRNPA1P32-201ENST00000396326 963 ntBASIC16.81■□□□□ 0.28
HMGB1P09429 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB1P09429 NKAIN1P1-201ENST00000435754 582 ntBASIC16.81■□□□□ 0.28
HMGB1P09429 ACTBP11-201ENST00000436287 1126 ntBASIC16.81■□□□□ 0.28
HMGB1P09429 OARD1-204ENST00000464633 717 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGB1P09429 CHCHD2P2-201ENST00000503744 321 ntBASIC16.81■□□□□ 0.28
HMGB1P09429 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC16.81■□□□□ 0.28
HMGB1P09429 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGB1P09429 AL022328.3-201ENST00000607943 679 ntBASIC16.81■□□□□ 0.28
HMGB1P09429 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB1P09429 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGB1P09429 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB1P09429 SRC-202ENST00000373558 4304 ntTSL 5 BASIC16.81■□□□□ 0.28
HMGB1P09429 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC16.81■□□□□ 0.28
HMGB1P09429 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
HMGB1P09429 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB1P09429 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB1P09429 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
HMGB1P09429 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC16.81■□□□□ 0.28
HMGB1P09429 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB1P09429 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGB1P09429 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGB1P09429 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC16.81■□□□□ 0.28
HMGB1P09429 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGB1P09429 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGB1P09429 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB1P09429 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms