Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RC3H1Q5TC82 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC17.57■□□□□ 0.4
RC3H1Q5TC82 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RC3H1Q5TC82 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RC3H1Q5TC82 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
RC3H1Q5TC82 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RC3H1Q5TC82 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 AL359092.2-201ENST00000423330 585 ntBASIC17.56■□□□□ 0.4
RC3H1Q5TC82 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 AC007279.1-201ENST00000448547 837 ntBASIC17.56■□□□□ 0.4
RC3H1Q5TC82 AP000533.1-201ENST00000456143 1177 ntBASIC17.56■□□□□ 0.4
RC3H1Q5TC82 RPSAP70-201ENST00000504462 864 ntBASIC17.56■□□□□ 0.4
RC3H1Q5TC82 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 ACY3-202ENST00000529256 933 ntTSL 3 BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 RN7SL524P-201ENST00000581152 300 ntBASIC17.56■□□□□ 0.4
RC3H1Q5TC82 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 AC020904.3-201ENST00000624199 442 ntBASIC17.56■□□□□ 0.4
RC3H1Q5TC82 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RC3H1Q5TC82 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 NRADDP-202ENST00000641269 1585 ntBASIC17.55■□□□□ 0.4
RC3H1Q5TC82 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 HNRNPA3P12-201ENST00000437410 1063 ntBASIC17.55■□□□□ 0.4
RC3H1Q5TC82 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 GRAMD4P6-201ENST00000556999 244 ntBASIC17.55■□□□□ 0.4
RC3H1Q5TC82 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 KF455155.1-201ENST00000604493 303 ntBASIC17.55■□□□□ 0.4
RC3H1Q5TC82 AC080013.5-201ENST00000607044 679 ntBASIC17.55■□□□□ 0.4
RC3H1Q5TC82 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 AC110057.1-201ENST00000636031 898 ntBASIC17.55■□□□□ 0.4
RC3H1Q5TC82 AL357143.1-203ENST00000639750 881 ntBASIC17.55■□□□□ 0.4
RC3H1Q5TC82 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RC3H1Q5TC82 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RC3H1Q5TC82 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
RC3H1Q5TC82 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RC3H1Q5TC82 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RC3H1Q5TC82 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC17.54■□□□□ 0.4
RC3H1Q5TC82 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RC3H1Q5TC82 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC17.54■□□□□ 0.4
RC3H1Q5TC82 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
RC3H1Q5TC82 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RC3H1Q5TC82 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms