Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 FAM90A12P-201ENST00000519497 2375 ntBASIC11.82□□□□□ -0.52
CDX1P47902 FAM90A24P-201ENST00000520792 2369 ntBASIC11.82□□□□□ -0.52
CDX1P47902 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC11.82□□□□□ -0.52
CDX1P47902 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC11.81□□□□□ -0.52
CDX1P47902 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 NEXN-201ENST00000330010 3195 ntTSL 2 BASIC11.81□□□□□ -0.52
CDX1P47902 CARHSP1-202ENST00000396593 3026 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC11.81□□□□□ -0.52
CDX1P47902 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC11.81□□□□□ -0.52
CDX1P47902 HPX-201ENST00000265983 1652 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 MIR497HG-202ENST00000572453 3838 ntBASIC11.81□□□□□ -0.52
CDX1P47902 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC11.81□□□□□ -0.52
CDX1P47902 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC11.81□□□□□ -0.52
CDX1P47902 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC11.81□□□□□ -0.52
CDX1P47902 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 TPM3P8-201ENST00000330554 643 ntBASIC11.81□□□□□ -0.52
CDX1P47902 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC11.81□□□□□ -0.52
CDX1P47902 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC11.81□□□□□ -0.52
CDX1P47902 HLA-V-201ENST00000429037 534 ntBASIC11.81□□□□□ -0.52
CDX1P47902 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC11.81□□□□□ -0.52
CDX1P47902 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC11.81□□□□□ -0.52
CDX1P47902 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
CDX1P47902 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC11.81□□□□□ -0.52
CDX1P47902 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC11.81□□□□□ -0.52
CDX1P47902 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC11.81□□□□□ -0.52
CDX1P47902 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC11.81□□□□□ -0.52
CDX1P47902 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC11.81□□□□□ -0.52
CDX1P47902 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
CDX1P47902 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC11.81□□□□□ -0.52
CDX1P47902 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC11.81□□□□□ -0.52
CDX1P47902 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC11.81□□□□□ -0.52
CDX1P47902 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC11.81□□□□□ -0.52
CDX1P47902 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC11.81□□□□□ -0.52
CDX1P47902 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 AC012508.2-201ENST00000567613 1472 ntBASIC11.81□□□□□ -0.52
CDX1P47902 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
CDX1P47902 C10orf90-202ENST00000356858 2995 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
CDX1P47902 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
CDX1P47902 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC11.81□□□□□ -0.52
CDX1P47902 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CDX1P47902 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
CDX1P47902 TBC1D8B-202ENST00000310452 2589 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
CDX1P47902 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC11.8□□□□□ -0.52
CDX1P47902 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
CDX1P47902 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC11.8□□□□□ -0.52
CDX1P47902 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC11.8□□□□□ -0.52
CDX1P47902 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC11.8□□□□□ -0.52
CDX1P47902 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 ILF3-201ENST00000250241 3035 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 SIX1-203ENST00000554986 1959 ntTSL 3 BASIC11.8□□□□□ -0.52
CDX1P47902 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 AC023794.5-201ENST00000564380 2157 ntBASIC11.8□□□□□ -0.52
CDX1P47902 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 AL008727.1-201ENST00000564460 4728 ntTSL 2 BASIC11.8□□□□□ -0.52
CDX1P47902 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC11.8□□□□□ -0.52
CDX1P47902 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
CDX1P47902 AC099336.1-201ENST00000417053 1171 ntBASIC11.8□□□□□ -0.52
CDX1P47902 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
CDX1P47902 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC11.8□□□□□ -0.52
CDX1P47902 AC007274.1-201ENST00000439805 662 ntBASIC11.8□□□□□ -0.52
CDX1P47902 YBX1P6-201ENST00000442962 1002 ntBASIC11.8□□□□□ -0.52
CDX1P47902 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC11.8□□□□□ -0.52
CDX1P47902 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC11.8□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms