Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
PTPN9P43378 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN9P43378 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC14.82□□□□□ -0.04
PTPN9P43378 AKR7A2P1-201ENST00000460134 915 ntBASIC14.82□□□□□ -0.04
PTPN9P43378 ARTN-209ENST00000479128 471 ntTSL 3 BASIC14.82□□□□□ -0.04
PTPN9P43378 KRT8P1-201ENST00000557533 1207 ntBASIC14.82□□□□□ -0.04
PTPN9P43378 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC14.82□□□□□ -0.04
PTPN9P43378 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC14.82□□□□□ -0.04
PTPN9P43378 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN9P43378 CR392039.2-201ENST00000623182 509 ntBASIC14.82□□□□□ -0.04
PTPN9P43378 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN9P43378 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN9P43378 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC14.82□□□□□ -0.04
PTPN9P43378 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
PTPN9P43378 FRMPD2B-201ENST00000431305 1347 ntBASIC14.82□□□□□ -0.04
PTPN9P43378 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.82□□□□□ -0.04
PTPN9P43378 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN9P43378 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC14.82□□□□□ -0.04
PTPN9P43378 AC020907.1-201ENST00000616460 1350 ntBASIC14.82□□□□□ -0.04
PTPN9P43378 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
PTPN9P43378 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN9P43378 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN9P43378 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN9P43378 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN9P43378 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN9P43378 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
PTPN9P43378 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN9P43378 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.81□□□□□ -0.04
PTPN9P43378 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
PTPN9P43378 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
PTPN9P43378 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 BAX-205ENST00000391871 687 ntTSL 5 BASIC14.81□□□□□ -0.04
PTPN9P43378 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 OR8T1P-201ENST00000421347 918 ntBASIC14.81□□□□□ -0.04
PTPN9P43378 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 DUX4L50-201ENST00000455245 715 ntBASIC14.81□□□□□ -0.04
PTPN9P43378 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC14.81□□□□□ -0.04
PTPN9P43378 CD164-210ENST00000512821 964 ntTSL 2 BASIC14.81□□□□□ -0.04
PTPN9P43378 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC14.81□□□□□ -0.04
PTPN9P43378 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC14.81□□□□□ -0.04
PTPN9P43378 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC14.81□□□□□ -0.04
PTPN9P43378 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
PTPN9P43378 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC14.81□□□□□ -0.04
PTPN9P43378 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.81□□□□□ -0.04
PTPN9P43378 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
PTPN9P43378 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC14.81□□□□□ -0.04
PTPN9P43378 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
PTPN9P43378 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC14.81□□□□□ -0.04
PTPN9P43378 AL139158.3-201ENST00000641212 1562 ntBASIC14.81□□□□□ -0.04
PTPN9P43378 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
PTPN9P43378 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTPN9P43378 AC130686.1-201ENST00000622936 2466 ntBASIC14.81□□□□□ -0.04
PTPN9P43378 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
PTPN9P43378 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.8□□□□□ -0.04
PTPN9P43378 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
PTPN9P43378 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.8□□□□□ -0.04
PTPN9P43378 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.8□□□□□ -0.04
PTPN9P43378 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 AC068760.1-201ENST00000493579 1953 ntBASIC14.8□□□□□ -0.04
PTPN9P43378 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
PTPN9P43378 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.8□□□□□ -0.04
PTPN9P43378 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 AL137784.3-201ENST00000623858 2288 ntBASIC14.8□□□□□ -0.04
PTPN9P43378 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
PTPN9P43378 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
PTPN9P43378 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTPN9P43378 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms