Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.25■□□□□ 0.19
SCN4AP35499 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SCN4AP35499 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SCN4AP35499 AC002350.2-201ENST00000623894 1828 ntBASIC16.25■□□□□ 0.19
SCN4AP35499 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SCN4AP35499 CCDC42-201ENST00000293845 1374 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
SCN4AP35499 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SCN4AP35499 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.25■□□□□ 0.19
SCN4AP35499 AC023509.3-202ENST00000591834 1609 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SCN4AP35499 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SCN4AP35499 CDK7-201ENST00000256443 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SCN4AP35499 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC16.25■□□□□ 0.19
SCN4AP35499 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCN4AP35499 TP73-207ENST00000378290 1831 ntTSL 2 BASIC16.24■□□□□ 0.19
SCN4AP35499 ZCCHC7-201ENST00000322831 1219 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SCN4AP35499 RNA5SP84-201ENST00000364740 107 ntBASIC16.24■□□□□ 0.19
SCN4AP35499 CLK2P1-201ENST00000416636 1294 ntBASIC16.24■□□□□ 0.19
SCN4AP35499 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC16.24■□□□□ 0.19
SCN4AP35499 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC16.24■□□□□ 0.19
SCN4AP35499 AC005077.3-201ENST00000449614 213 ntBASIC16.24■□□□□ 0.19
SCN4AP35499 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC16.24■□□□□ 0.19
SCN4AP35499 RRNAD1-204ENST00000476229 1096 ntTSL 5 BASIC16.24■□□□□ 0.19
SCN4AP35499 DDX11L8-201ENST00000535849 366 ntBASIC16.24■□□□□ 0.19
SCN4AP35499 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC16.24■□□□□ 0.19
SCN4AP35499 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.24■□□□□ 0.19
SCN4AP35499 DEGS1-202ENST00000391877 1345 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SCN4AP35499 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC16.24■□□□□ 0.19
SCN4AP35499 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC16.24■□□□□ 0.19
SCN4AP35499 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCN4AP35499 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SCN4AP35499 ARCN1-204ENST00000534182 1669 ntTSL 5 BASIC16.24■□□□□ 0.19
SCN4AP35499 AC012158.1-201ENST00000535684 1366 ntTSL 2 BASIC16.24■□□□□ 0.19
SCN4AP35499 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCN4AP35499 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCN4AP35499 TUBD1-202ENST00000340993 1769 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SCN4AP35499 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCN4AP35499 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SCN4AP35499 IGHE-202ENST00000641420 1485 ntAPPRIS P5 BASIC16.24■□□□□ 0.19
SCN4AP35499 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.24■□□□□ 0.19
SCN4AP35499 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SCN4AP35499 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCN4AP35499 EEF1G-201ENST00000329251 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCN4AP35499 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCN4AP35499 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCN4AP35499 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCN4AP35499 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCN4AP35499 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC16.24■□□□□ 0.19
SCN4AP35499 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC16.24■□□□□ 0.19
SCN4AP35499 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
SCN4AP35499 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCN4AP35499 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCN4AP35499 MARCKSL1P2-201ENST00000401037 976 ntBASIC16.24■□□□□ 0.19
SCN4AP35499 CNBP-202ENST00000441626 1040 ntTSL 2 BASIC16.24■□□□□ 0.19
SCN4AP35499 TPT1P11-201ENST00000458482 498 ntBASIC16.24■□□□□ 0.19
SCN4AP35499 AC004969.1-201ENST00000471553 578 ntTSL 5 BASIC16.24■□□□□ 0.19
SCN4AP35499 FAR1-IT1-201ENST00000525233 368 ntTSL 3 BASIC16.24■□□□□ 0.19
SCN4AP35499 AC007728.1-202ENST00000564510 787 ntTSL 3 BASIC16.24■□□□□ 0.19
SCN4AP35499 AC015818.3-201ENST00000583797 589 ntBASIC16.24■□□□□ 0.19
SCN4AP35499 PILRB-213ENST00000609309 993 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCN4AP35499 PAX6-238ENST00000638755 1161 ntTSL 5 BASIC16.24■□□□□ 0.19
SCN4AP35499 PIGB-202ENST00000539642 1668 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
SCN4AP35499 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCN4AP35499 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCN4AP35499 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SCN4AP35499 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.23■□□□□ 0.19
SCN4AP35499 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.23■□□□□ 0.19
SCN4AP35499 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.23■□□□□ 0.19
SCN4AP35499 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCN4AP35499 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SCN4AP35499 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SCN4AP35499 APEX1-201ENST00000216714 1484 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCN4AP35499 CA6-205ENST00000480186 1493 ntTSL 2 BASIC16.23■□□□□ 0.19
SCN4AP35499 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC16.23■□□□□ 0.19
SCN4AP35499 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCN4AP35499 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCN4AP35499 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCN4AP35499 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCN4AP35499 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC16.23■□□□□ 0.19
SCN4AP35499 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC16.23■□□□□ 0.19
SCN4AP35499 COPS5-203ENST00000517736 1621 ntTSL 5 BASIC16.23■□□□□ 0.19
SCN4AP35499 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCN4AP35499 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC16.23■□□□□ 0.19
SCN4AP35499 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
SCN4AP35499 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SCN4AP35499 SLIRP-201ENST00000238688 394 ntAPPRIS P3 TSL 2 BASIC16.23■□□□□ 0.19
SCN4AP35499 SFTPA2-202ENST00000372327 815 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCN4AP35499 POLR2F-202ENST00000405557 560 ntTSL 5 BASIC16.23■□□□□ 0.19
SCN4AP35499 RN7SL452P-201ENST00000482923 291 ntBASIC16.23■□□□□ 0.19
SCN4AP35499 MYCBP-203ENST00000494695 750 ntTSL 2 BASIC16.23■□□□□ 0.19
SCN4AP35499 AC090152.1-202ENST00000518993 1079 ntTSL 3 BASIC16.23■□□□□ 0.19
SCN4AP35499 AC100858.2-201ENST00000531948 487 ntTSL 3 BASIC16.23■□□□□ 0.19
SCN4AP35499 AC025259.1-201ENST00000550301 647 ntTSL 3 BASIC16.23■□□□□ 0.19
SCN4AP35499 AC104759.1-201ENST00000559109 939 ntBASIC16.23■□□□□ 0.19
SCN4AP35499 AL390726.3-201ENST00000567428 635 ntTSL 5 BASIC16.23■□□□□ 0.19
SCN4AP35499 POLR2F-213ENST00000606538 760 ntTSL 2 BASIC16.23■□□□□ 0.19
SCN4AP35499 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
SCN4AP35499 AC106872.9-201ENST00000512437 1393 ntBASIC16.23■□□□□ 0.19
SCN4AP35499 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCN4AP35499 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCN4AP35499 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms