Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC12.49□□□□□ -0.41
COL8A1P27658 AP002353.1-201ENST00000528257 1599 ntBASIC12.49□□□□□ -0.41
COL8A1P27658 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC12.49□□□□□ -0.41
COL8A1P27658 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC12.49□□□□□ -0.41
COL8A1P27658 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 TLE1P1-201ENST00000422965 589 ntBASIC12.49□□□□□ -0.41
COL8A1P27658 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC12.49□□□□□ -0.41
COL8A1P27658 CDCA4P4-201ENST00000435216 680 ntBASIC12.49□□□□□ -0.41
COL8A1P27658 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
COL8A1P27658 GPX3-202ENST00000517973 612 ntTSL 3 BASIC12.49□□□□□ -0.41
COL8A1P27658 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC12.49□□□□□ -0.41
COL8A1P27658 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC12.49□□□□□ -0.41
COL8A1P27658 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC12.49□□□□□ -0.41
COL8A1P27658 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC12.49□□□□□ -0.41
COL8A1P27658 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 AC091304.3-201ENST00000566500 716 ntBASIC12.49□□□□□ -0.41
COL8A1P27658 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC12.49□□□□□ -0.41
COL8A1P27658 MIR4254-201ENST00000581063 76 ntBASIC12.49□□□□□ -0.41
COL8A1P27658 APOC1-209ENST00000592885 562 ntTSL 3 BASIC12.49□□□□□ -0.41
COL8A1P27658 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC12.49□□□□□ -0.41
COL8A1P27658 AL512324.3-201ENST00000619383 882 ntBASIC12.49□□□□□ -0.41
COL8A1P27658 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC12.49□□□□□ -0.41
COL8A1P27658 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
COL8A1P27658 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC12.49□□□□□ -0.41
COL8A1P27658 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC12.49□□□□□ -0.41
COL8A1P27658 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC12.49□□□□□ -0.41
COL8A1P27658 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC12.48□□□□□ -0.41
COL8A1P27658 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC12.48□□□□□ -0.41
COL8A1P27658 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
COL8A1P27658 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 AC012508.2-201ENST00000567613 1472 ntBASIC12.48□□□□□ -0.41
COL8A1P27658 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
COL8A1P27658 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
COL8A1P27658 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC12.48□□□□□ -0.41
COL8A1P27658 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
COL8A1P27658 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
COL8A1P27658 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC12.48□□□□□ -0.41
COL8A1P27658 AL121949.3-201ENST00000406684 385 ntBASIC12.48□□□□□ -0.41
COL8A1P27658 AL035696.2-201ENST00000407941 709 ntBASIC12.48□□□□□ -0.41
COL8A1P27658 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC12.48□□□□□ -0.41
COL8A1P27658 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
COL8A1P27658 IFNWP2-201ENST00000431203 580 ntBASIC12.48□□□□□ -0.41
COL8A1P27658 PTPA-215ENST00000432124 567 ntTSL 4 BASIC12.48□□□□□ -0.41
COL8A1P27658 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC12.48□□□□□ -0.41
COL8A1P27658 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC12.48□□□□□ -0.41
COL8A1P27658 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC12.48□□□□□ -0.41
COL8A1P27658 AC010900.1-201ENST00000449849 1296 ntBASIC12.48□□□□□ -0.41
COL8A1P27658 AC092896.1-201ENST00000465850 380 ntBASIC12.48□□□□□ -0.41
COL8A1P27658 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC12.48□□□□□ -0.41
COL8A1P27658 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC12.48□□□□□ -0.41
COL8A1P27658 OR2A1-AS1-210ENST00000496968 531 ntBASIC12.48□□□□□ -0.41
COL8A1P27658 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC12.48□□□□□ -0.41
COL8A1P27658 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC12.48□□□□□ -0.41
COL8A1P27658 VPS18-202ENST00000558474 873 ntTSL 3 BASIC12.48□□□□□ -0.41
COL8A1P27658 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC12.48□□□□□ -0.41
COL8A1P27658 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC12.48□□□□□ -0.41
COL8A1P27658 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms