Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC009084.3-201ENST00000623356 437 ntBASIC16.75■□□□□ 0.27
HLA-DOAP06340 AL132780.4-201ENST00000624870 1135 ntBASIC16.75■□□□□ 0.27
HLA-DOAP06340 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC16.75■□□□□ 0.27
HLA-DOAP06340 IL9RP3-201ENST00000442856 1674 ntBASIC16.75■□□□□ 0.27
HLA-DOAP06340 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DOAP06340 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
HLA-DOAP06340 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
HLA-DOAP06340 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC16.74■□□□□ 0.27
HLA-DOAP06340 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC16.74■□□□□ 0.27
HLA-DOAP06340 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC16.74■□□□□ 0.27
HLA-DOAP06340 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.74■□□□□ 0.27
HLA-DOAP06340 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
HLA-DOAP06340 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
HLA-DOAP06340 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC16.74■□□□□ 0.27
HLA-DOAP06340 HINT1-205ENST00000508488 703 ntTSL 2 BASIC16.74■□□□□ 0.27
HLA-DOAP06340 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC16.74■□□□□ 0.27
HLA-DOAP06340 NAA40-205ENST00000539656 577 ntTSL 4 BASIC16.74■□□□□ 0.27
HLA-DOAP06340 KRT8P2-201ENST00000556193 944 ntBASIC16.74■□□□□ 0.27
HLA-DOAP06340 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC16.74■□□□□ 0.27
HLA-DOAP06340 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC16.74■□□□□ 0.27
HLA-DOAP06340 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.74■□□□□ 0.27
HLA-DOAP06340 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
HLA-DOAP06340 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
HLA-DOAP06340 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC16.74■□□□□ 0.27
HLA-DOAP06340 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC16.74■□□□□ 0.27
HLA-DOAP06340 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DOAP06340 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DOAP06340 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DOAP06340 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 PIN4P1-201ENST00000451079 396 ntBASIC16.73■□□□□ 0.27
HLA-DOAP06340 RNA5SP406-201ENST00000516106 112 ntBASIC16.73■□□□□ 0.27
HLA-DOAP06340 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 MIR4265-201ENST00000582152 99 ntBASIC16.73■□□□□ 0.27
HLA-DOAP06340 AL359091.4-201ENST00000610052 409 ntBASIC16.73■□□□□ 0.27
HLA-DOAP06340 LINC00244-201ENST00000625073 613 ntBASIC16.73■□□□□ 0.27
HLA-DOAP06340 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DOAP06340 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DOAP06340 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HLA-DOAP06340 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DOAP06340 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms