Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC15.04■□□□□ -0
APOEP02649 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC15.04■□□□□ -0
APOEP02649 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC15.04■□□□□ -0
APOEP02649 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
APOEP02649 RAN-210ENST00000541630 1475 ntTSL 2 BASIC15.04■□□□□ -0
APOEP02649 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC15.04■□□□□ -0
APOEP02649 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC15.04■□□□□ -0
APOEP02649 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
APOEP02649 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 RN7SKP214-201ENST00000364208 315 ntBASIC15.04■□□□□ -0
APOEP02649 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC15.04■□□□□ -0
APOEP02649 HNRNPA1P41-201ENST00000397777 928 ntBASIC15.04■□□□□ -0
APOEP02649 DEF8-202ENST00000418391 852 ntTSL 2 BASIC15.04■□□□□ -0
APOEP02649 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 SDHD-202ENST00000525291 790 ntTSL 3 BASIC15.04■□□□□ -0
APOEP02649 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC15.04■□□□□ -0
APOEP02649 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC15.04■□□□□ -0
APOEP02649 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC15.04■□□□□ -0
APOEP02649 AC003686.1-201ENST00000550956 1034 ntBASIC15.04■□□□□ -0
APOEP02649 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC15.04■□□□□ -0
APOEP02649 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC15.04■□□□□ -0
APOEP02649 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC15.04■□□□□ -0
APOEP02649 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC15.04■□□□□ -0
APOEP02649 DDX5-235ENST00000630471 473 ntTSL 4 BASIC15.04■□□□□ -0
APOEP02649 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC15.04■□□□□ -0
APOEP02649 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC15.04■□□□□ -0
APOEP02649 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC15.04■□□□□ -0
APOEP02649 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
APOEP02649 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
APOEP02649 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC15.04■□□□□ -0
APOEP02649 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC15.03■□□□□ -0
APOEP02649 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC15.03■□□□□ -0
APOEP02649 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
APOEP02649 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC15.03■□□□□ -0
APOEP02649 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC15.03■□□□□ -0
APOEP02649 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
APOEP02649 AC020910.6-201ENST00000623084 1459 ntBASIC15.03■□□□□ -0
APOEP02649 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
APOEP02649 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC15.03■□□□□ -0
APOEP02649 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
APOEP02649 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
APOEP02649 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC15.03■□□□□ -0
APOEP02649 MIR769-201ENST00000390225 118 ntBASIC15.03■□□□□ -0
APOEP02649 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
APOEP02649 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC15.03■□□□□ -0
APOEP02649 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC15.03■□□□□ -0
APOEP02649 OR2R1P-201ENST00000441404 914 ntBASIC15.03■□□□□ -0
APOEP02649 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC15.03■□□□□ -0
APOEP02649 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC15.03■□□□□ -0
APOEP02649 HIST2H2BC-201ENST00000498492 580 ntBASIC15.03■□□□□ -0
APOEP02649 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC15.03■□□□□ -0
APOEP02649 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC15.03■□□□□ -0
APOEP02649 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC15.03■□□□□ -0
APOEP02649 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC15.03■□□□□ -0
APOEP02649 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC15.03■□□□□ -0
APOEP02649 AL157813.1-201ENST00000612996 587 ntBASIC15.03■□□□□ -0
APOEP02649 AL591471.1-201ENST00000621855 229 ntBASIC15.03■□□□□ -0
APOEP02649 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC15.03■□□□□ -0
APOEP02649 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
APOEP02649 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC15.03■□□□□ -0
APOEP02649 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
APOEP02649 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
APOEP02649 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
APOEP02649 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC15.03■□□□□ -0
APOEP02649 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC15.03■□□□□ -0
APOEP02649 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC15.03■□□□□ -0
APOEP02649 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC15.03■□□□□ -0
APOEP02649 AL731571.1-201ENST00000617058 5428 ntBASIC15.03■□□□□ -0
APOEP02649 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
APOEP02649 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC15.03■□□□□ -0
APOEP02649 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
APOEP02649 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC15.03■□□□□ -0
APOEP02649 AL157791.1-201ENST00000553667 1699 ntBASIC15.03■□□□□ -0
APOEP02649 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
APOEP02649 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
APOEP02649 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC15.02■□□□□ -0
APOEP02649 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
APOEP02649 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
APOEP02649 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC15.02■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms