Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
TRIM39Q9HCM9 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 COL6A4P2-202ENST00000504443 2753 ntBASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 NCR3-202ENST00000376071 541 ntTSL 5 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 ACTG1P2-201ENST00000415776 1125 ntBASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 ACTG1P11-201ENST00000425411 1125 ntBASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 AC006335.1-201ENST00000445200 547 ntBASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 AL596276.2-201ENST00000447525 331 ntBASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 AL161670.2-201ENST00000557650 1227 ntBASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 MIR3619-201ENST00000579667 83 ntBASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 AP002353.1-201ENST00000528257 1599 ntBASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
TRIM39Q9HCM9 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 AC008132.1-202ENST00000342005 1389 ntBASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 CMC1-204ENST00000423894 549 ntTSL 2 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC14.24□□□□□ -0.13
TRIM39Q9HCM9 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms