Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC16.51■□□□□ 0.23
SHROOM1Q2M3G4 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 RPL13AP3-202ENST00000494676 1473 ntBASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 LINC00265-2P-201ENST00000413372 782 ntBASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 TRMT112P3-201ENST00000580149 358 ntBASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 AC002472.4-201ENST00000641915 272 ntBASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM1Q2M3G4 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 AC010234.1-201ENST00000494599 870 ntBASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 RPS23-207ENST00000511844 530 ntTSL 2 BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 RN7SKP155-201ENST00000516031 288 ntBASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 VENTXP3-201ENST00000546480 773 ntBASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 SNORD3B-1-201ENST00000577988 758 ntBASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 AP005264.5-201ENST00000590066 467 ntBASIC16.49■□□□□ 0.23
SHROOM1Q2M3G4 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms