Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
USP42Q9H9J4 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC28.94■■■□□ 2.22
USP42Q9H9J4 AC092437.1-201ENST00000624794 1048 ntBASIC28.94■■■□□ 2.22
USP42Q9H9J4 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC28.94■■■□□ 2.22
USP42Q9H9J4 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
USP42Q9H9J4 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC28.94■■■□□ 2.22
USP42Q9H9J4 VGF-203ENST00000611537 1622 ntTSL 5 BASIC28.94■■■□□ 2.22
USP42Q9H9J4 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC28.94■■■□□ 2.22
USP42Q9H9J4 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC28.94■■■□□ 2.22
USP42Q9H9J4 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC28.94■■■□□ 2.22
USP42Q9H9J4 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC28.94■■■□□ 2.22
USP42Q9H9J4 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC28.94■■■□□ 2.22
USP42Q9H9J4 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC28.94■■■□□ 2.22
USP42Q9H9J4 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC28.93■■■□□ 2.22
USP42Q9H9J4 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
USP42Q9H9J4 MED17-227ENST00000640521 2047 ntTSL 5 BASIC28.93■■■□□ 2.22
USP42Q9H9J4 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
USP42Q9H9J4 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
USP42Q9H9J4 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC28.93■■■□□ 2.22
USP42Q9H9J4 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC28.93■■■□□ 2.22
USP42Q9H9J4 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC28.93■■■□□ 2.22
USP42Q9H9J4 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC28.93■■■□□ 2.22
USP42Q9H9J4 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC28.93■■■□□ 2.22
USP42Q9H9J4 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC28.93■■■□□ 2.22
USP42Q9H9J4 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC28.93■■■□□ 2.22
USP42Q9H9J4 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC28.92■■■□□ 2.22
USP42Q9H9J4 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC28.92■■■□□ 2.22
USP42Q9H9J4 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC28.92■■■□□ 2.22
USP42Q9H9J4 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
USP42Q9H9J4 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
USP42Q9H9J4 NKILA-201ENST00000613231 537 ntTSL 4 BASIC28.92■■■□□ 2.22
USP42Q9H9J4 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC28.91■■■□□ 2.22
USP42Q9H9J4 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC28.91■■■□□ 2.22
USP42Q9H9J4 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
USP42Q9H9J4 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC28.91■■■□□ 2.22
USP42Q9H9J4 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
USP42Q9H9J4 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC28.91■■■□□ 2.22
USP42Q9H9J4 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC28.91■■■□□ 2.22
USP42Q9H9J4 DUX4L2-201ENST00000561772 1275 ntBASIC28.91■■■□□ 2.22
USP42Q9H9J4 AL137784.2-201ENST00000607332 1000 ntBASIC28.91■■■□□ 2.22
USP42Q9H9J4 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC28.91■■■□□ 2.22
USP42Q9H9J4 DUX4L6-201ENST00000626483 1275 ntBASIC28.91■■■□□ 2.22
USP42Q9H9J4 DUX4L1-201ENST00000627662 1275 ntBASIC28.91■■■□□ 2.22
USP42Q9H9J4 DUX4L8-201ENST00000629013 1275 ntBASIC28.91■■■□□ 2.22
USP42Q9H9J4 DUX4L3-201ENST00000630187 1275 ntBASIC28.91■■■□□ 2.22
USP42Q9H9J4 DUX4L7-201ENST00000630678 1275 ntBASIC28.91■■■□□ 2.22
USP42Q9H9J4 DUX4L5-201ENST00000630834 1275 ntBASIC28.91■■■□□ 2.22
USP42Q9H9J4 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC28.9■■■□□ 2.22
USP42Q9H9J4 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC28.9■■■□□ 2.22
USP42Q9H9J4 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC28.9■■■□□ 2.22
USP42Q9H9J4 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC28.9■■■□□ 2.22
USP42Q9H9J4 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
USP42Q9H9J4 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
USP42Q9H9J4 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC28.9■■■□□ 2.22
USP42Q9H9J4 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
USP42Q9H9J4 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
USP42Q9H9J4 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC28.89■■■□□ 2.22
USP42Q9H9J4 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC28.89■■■□□ 2.22
USP42Q9H9J4 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC28.89■■■□□ 2.21
USP42Q9H9J4 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC28.88■■■□□ 2.21
USP42Q9H9J4 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC28.88■■■□□ 2.21
USP42Q9H9J4 AC138932.3-201ENST00000567634 1902 ntBASIC28.88■■■□□ 2.21
USP42Q9H9J4 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
USP42Q9H9J4 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC28.88■■■□□ 2.21
USP42Q9H9J4 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
USP42Q9H9J4 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
USP42Q9H9J4 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
USP42Q9H9J4 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
USP42Q9H9J4 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC28.87■■■□□ 2.21
USP42Q9H9J4 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
USP42Q9H9J4 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC28.87■■■□□ 2.21
USP42Q9H9J4 AC126544.1-201ENST00000580842 1059 ntBASIC28.87■■■□□ 2.21
USP42Q9H9J4 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC28.87■■■□□ 2.21
USP42Q9H9J4 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC28.86■■■□□ 2.21
USP42Q9H9J4 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC28.86■■■□□ 2.21
USP42Q9H9J4 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC28.86■■■□□ 2.21
USP42Q9H9J4 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC28.86■■■□□ 2.21
USP42Q9H9J4 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC28.86■■■□□ 2.21
USP42Q9H9J4 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC28.86■■■□□ 2.21
USP42Q9H9J4 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC28.86■■■□□ 2.21
USP42Q9H9J4 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC28.86■■■□□ 2.21
USP42Q9H9J4 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
USP42Q9H9J4 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC28.86■■■□□ 2.21
USP42Q9H9J4 RAB43-208ENST00000615093 783 ntTSL 5 BASIC28.86■■■□□ 2.21
USP42Q9H9J4 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC28.86■■■□□ 2.21
USP42Q9H9J4 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
USP42Q9H9J4 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC28.85■■■□□ 2.21
USP42Q9H9J4 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
USP42Q9H9J4 TSPY26P-201ENST00000476365 1326 ntBASIC28.85■■■□□ 2.21
USP42Q9H9J4 GTSE1-AS1-202ENST00000623117 1518 ntBASIC28.85■■■□□ 2.21
USP42Q9H9J4 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC28.85■■■□□ 2.21
USP42Q9H9J4 SLC47A1P1-202ENST00000449666 945 ntBASIC28.85■■■□□ 2.21
USP42Q9H9J4 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC28.85■■■□□ 2.21
USP42Q9H9J4 pRNA.6-201ENST00000610482 90 ntBASIC28.85■■■□□ 2.21
USP42Q9H9J4 pRNA.5-201ENST00000612139 90 ntBASIC28.85■■■□□ 2.21
USP42Q9H9J4 pRNA.11-201ENST00000618423 90 ntBASIC28.85■■■□□ 2.21
USP42Q9H9J4 pRNA.13-201ENST00000619112 90 ntBASIC28.85■■■□□ 2.21
USP42Q9H9J4 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
USP42Q9H9J4 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
USP42Q9H9J4 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC28.85■■■□□ 2.21
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms