Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
UPF3AQ9H1J1 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC25.33■■□□□ 1.65
UPF3AQ9H1J1 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC25.33■■□□□ 1.65
UPF3AQ9H1J1 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
UPF3AQ9H1J1 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC25.33■■□□□ 1.65
UPF3AQ9H1J1 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
UPF3AQ9H1J1 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC25.33■■□□□ 1.65
UPF3AQ9H1J1 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC25.33■■□□□ 1.65
UPF3AQ9H1J1 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC25.33■■□□□ 1.65
UPF3AQ9H1J1 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC25.33■■□□□ 1.64
UPF3AQ9H1J1 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.64
UPF3AQ9H1J1 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 AC027612.3-201ENST00000413684 1047 ntBASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 DUX4L2-201ENST00000561772 1275 ntBASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 RAB43-208ENST00000615093 783 ntTSL 5 BASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 DUX4L6-201ENST00000626483 1275 ntBASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 DUX4L1-201ENST00000627662 1275 ntBASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 DUX4L8-201ENST00000629013 1275 ntBASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 DUX4L3-201ENST00000630187 1275 ntBASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 DUX4L7-201ENST00000630678 1275 ntBASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 DUX4L5-201ENST00000630834 1275 ntBASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
UPF3AQ9H1J1 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
UPF3AQ9H1J1 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC25.31■■□□□ 1.64
UPF3AQ9H1J1 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC25.31■■□□□ 1.64
UPF3AQ9H1J1 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
UPF3AQ9H1J1 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
UPF3AQ9H1J1 NME4-202ENST00000382940 766 ntTSL 3 BASIC25.31■■□□□ 1.64
UPF3AQ9H1J1 AC090192.1-201ENST00000517740 490 ntBASIC25.31■■□□□ 1.64
UPF3AQ9H1J1 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
UPF3AQ9H1J1 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC25.31■■□□□ 1.64
UPF3AQ9H1J1 NME4-211ENST00000620944 1193 ntTSL 2 BASIC25.31■■□□□ 1.64
UPF3AQ9H1J1 AL358852.1-201ENST00000623174 1268 ntBASIC25.31■■□□□ 1.64
UPF3AQ9H1J1 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC25.31■■□□□ 1.64
UPF3AQ9H1J1 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC25.31■■□□□ 1.64
UPF3AQ9H1J1 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC25.31■■□□□ 1.64
UPF3AQ9H1J1 AC091060.1-201ENST00000623524 1766 ntBASIC25.31■■□□□ 1.64
UPF3AQ9H1J1 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
UPF3AQ9H1J1 AC145676.1-201ENST00000514988 2004 ntBASIC25.3■■□□□ 1.64
UPF3AQ9H1J1 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC25.3■■□□□ 1.64
UPF3AQ9H1J1 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC25.3■■□□□ 1.64
UPF3AQ9H1J1 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
UPF3AQ9H1J1 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
UPF3AQ9H1J1 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
UPF3AQ9H1J1 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
UPF3AQ9H1J1 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
UPF3AQ9H1J1 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
UPF3AQ9H1J1 AC123595.1-201ENST00000440769 1046 ntBASIC25.3■■□□□ 1.64
UPF3AQ9H1J1 IGHV3-19-201ENST00000521488 291 ntBASIC25.3■■□□□ 1.64
UPF3AQ9H1J1 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
UPF3AQ9H1J1 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC25.3■■□□□ 1.64
UPF3AQ9H1J1 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
UPF3AQ9H1J1 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
UPF3AQ9H1J1 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
UPF3AQ9H1J1 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
UPF3AQ9H1J1 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC25.29■■□□□ 1.64
UPF3AQ9H1J1 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
UPF3AQ9H1J1 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC25.29■■□□□ 1.64
UPF3AQ9H1J1 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
UPF3AQ9H1J1 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
UPF3AQ9H1J1 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC25.29■■□□□ 1.64
UPF3AQ9H1J1 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
UPF3AQ9H1J1 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC25.29■■□□□ 1.64
UPF3AQ9H1J1 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
UPF3AQ9H1J1 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC25.28■■□□□ 1.64
UPF3AQ9H1J1 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC25.28■■□□□ 1.64
UPF3AQ9H1J1 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC25.28■■□□□ 1.64
UPF3AQ9H1J1 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC25.28■■□□□ 1.64
UPF3AQ9H1J1 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
UPF3AQ9H1J1 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC25.28■■□□□ 1.64
UPF3AQ9H1J1 AC092437.1-201ENST00000624794 1048 ntBASIC25.28■■□□□ 1.64
UPF3AQ9H1J1 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
UPF3AQ9H1J1 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
UPF3AQ9H1J1 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC25.27■■□□□ 1.64
UPF3AQ9H1J1 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC25.27■■□□□ 1.64
UPF3AQ9H1J1 EI24-204ENST00000527235 1625 ntTSL 5 BASIC25.27■■□□□ 1.64
UPF3AQ9H1J1 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC25.27■■□□□ 1.64
UPF3AQ9H1J1 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
UPF3AQ9H1J1 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
UPF3AQ9H1J1 MIR572-201ENST00000384983 95 ntBASIC25.27■■□□□ 1.64
UPF3AQ9H1J1 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC25.27■■□□□ 1.64
UPF3AQ9H1J1 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
UPF3AQ9H1J1 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
UPF3AQ9H1J1 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
UPF3AQ9H1J1 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC25.27■■□□□ 1.64
UPF3AQ9H1J1 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
UPF3AQ9H1J1 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC25.26■■□□□ 1.63
UPF3AQ9H1J1 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
UPF3AQ9H1J1 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC25.26■■□□□ 1.63
UPF3AQ9H1J1 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC25.26■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms