Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC23.52■■□□□ 1.36
RNF38Q9H0F5 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RNF38Q9H0F5 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC23.52■■□□□ 1.36
RNF38Q9H0F5 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
RNF38Q9H0F5 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC23.52■■□□□ 1.36
RNF38Q9H0F5 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
RNF38Q9H0F5 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RNF38Q9H0F5 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
RNF38Q9H0F5 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
RNF38Q9H0F5 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
RNF38Q9H0F5 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
RNF38Q9H0F5 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
RNF38Q9H0F5 HYI-206ENST00000372434 1025 ntTSL 5 BASIC23.51■■□□□ 1.35
RNF38Q9H0F5 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
RNF38Q9H0F5 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC23.51■■□□□ 1.35
RNF38Q9H0F5 AF213884.3-201ENST00000563833 479 ntBASIC23.51■■□□□ 1.35
RNF38Q9H0F5 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC23.51■■□□□ 1.35
RNF38Q9H0F5 AL138724.1-201ENST00000606771 1088 ntBASIC23.51■■□□□ 1.35
RNF38Q9H0F5 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
RNF38Q9H0F5 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
RNF38Q9H0F5 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC23.51■■□□□ 1.35
RNF38Q9H0F5 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
RNF38Q9H0F5 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC23.5■■□□□ 1.35
RNF38Q9H0F5 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
RNF38Q9H0F5 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
RNF38Q9H0F5 MIR939-201ENST00000401314 82 ntBASIC23.5■■□□□ 1.35
RNF38Q9H0F5 HES6-206ENST00000409574 738 ntTSL 2 BASIC23.5■■□□□ 1.35
RNF38Q9H0F5 AP001330.3-201ENST00000520123 633 ntBASIC23.5■■□□□ 1.35
RNF38Q9H0F5 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.5■■□□□ 1.35
RNF38Q9H0F5 AC011298.3-201ENST00000615796 283 ntBASIC23.5■■□□□ 1.35
RNF38Q9H0F5 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
RNF38Q9H0F5 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
RNF38Q9H0F5 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC23.5■■□□□ 1.35
RNF38Q9H0F5 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
RNF38Q9H0F5 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC23.49■■□□□ 1.35
RNF38Q9H0F5 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
RNF38Q9H0F5 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC23.49■■□□□ 1.35
RNF38Q9H0F5 MIR3181-201ENST00000578512 73 ntBASIC23.49■■□□□ 1.35
RNF38Q9H0F5 AC009086.3-201ENST00000623486 1008 ntBASIC23.49■■□□□ 1.35
RNF38Q9H0F5 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC23.49■■□□□ 1.35
RNF38Q9H0F5 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
RNF38Q9H0F5 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC23.49■■□□□ 1.35
RNF38Q9H0F5 LINC01124-201ENST00000409786 2117 ntBASIC23.48■■□□□ 1.35
RNF38Q9H0F5 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC23.48■■□□□ 1.35
RNF38Q9H0F5 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC23.48■■□□□ 1.35
RNF38Q9H0F5 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC23.48■■□□□ 1.35
RNF38Q9H0F5 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
RNF38Q9H0F5 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
RNF38Q9H0F5 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
RNF38Q9H0F5 GUK1-205ENST00000366722 850 ntTSL 3 BASIC23.48■■□□□ 1.35
RNF38Q9H0F5 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC23.48■■□□□ 1.35
RNF38Q9H0F5 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC23.48■■□□□ 1.35
RNF38Q9H0F5 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC23.48■■□□□ 1.35
RNF38Q9H0F5 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
RNF38Q9H0F5 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
RNF38Q9H0F5 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC23.47■■□□□ 1.35
RNF38Q9H0F5 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
RNF38Q9H0F5 ASB1-202ENST00000409297 878 ntTSL 5 BASIC23.47■■□□□ 1.35
RNF38Q9H0F5 MAG-206ENST00000597035 542 ntTSL 4 BASIC23.47■■□□□ 1.35
RNF38Q9H0F5 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
RNF38Q9H0F5 GTSE1-AS1-202ENST00000623117 1518 ntBASIC23.47■■□□□ 1.35
RNF38Q9H0F5 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
RNF38Q9H0F5 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
RNF38Q9H0F5 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
RNF38Q9H0F5 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC23.46■■□□□ 1.35
RNF38Q9H0F5 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC23.46■■□□□ 1.35
RNF38Q9H0F5 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC23.46■■□□□ 1.35
RNF38Q9H0F5 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC23.46■■□□□ 1.35
RNF38Q9H0F5 AL139125.2-201ENST00000623134 1869 ntBASIC23.46■■□□□ 1.35
RNF38Q9H0F5 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
RNF38Q9H0F5 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.45■■□□□ 1.35
RNF38Q9H0F5 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.35
RNF38Q9H0F5 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC23.45■■□□□ 1.35
RNF38Q9H0F5 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
RNF38Q9H0F5 LINC00543-201ENST00000567234 1845 ntBASIC23.45■■□□□ 1.34
RNF38Q9H0F5 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
RNF38Q9H0F5 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
RNF38Q9H0F5 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC23.45■■□□□ 1.34
RNF38Q9H0F5 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.34
RNF38Q9H0F5 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC23.45■■□□□ 1.34
RNF38Q9H0F5 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC23.45■■□□□ 1.34
RNF38Q9H0F5 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC23.45■■□□□ 1.34
RNF38Q9H0F5 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC23.45■■□□□ 1.34
RNF38Q9H0F5 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.34
RNF38Q9H0F5 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
RNF38Q9H0F5 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
RNF38Q9H0F5 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
RNF38Q9H0F5 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
RNF38Q9H0F5 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC23.44■■□□□ 1.34
RNF38Q9H0F5 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
RNF38Q9H0F5 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
RNF38Q9H0F5 AC136469.2-201ENST00000623944 1028 ntBASIC23.44■■□□□ 1.34
RNF38Q9H0F5 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.44■■□□□ 1.34
RNF38Q9H0F5 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
RNF38Q9H0F5 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
RNF38Q9H0F5 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC23.44■■□□□ 1.34
RNF38Q9H0F5 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
RNF38Q9H0F5 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
RNF38Q9H0F5 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC23.43■■□□□ 1.34
RNF38Q9H0F5 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC23.43■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms