Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
NKX3-1Q99801 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
NKX3-1Q99801 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
NKX3-1Q99801 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
NKX3-1Q99801 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
NKX3-1Q99801 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NKX3-1Q99801 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NKX3-1Q99801 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
NKX3-1Q99801 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
NKX3-1Q99801 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
NKX3-1Q99801 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NKX3-1Q99801 AC129492.7-201ENST00000622992 756 ntBASIC19.6■□□□□ 0.73
NKX3-1Q99801 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC19.6■□□□□ 0.73
NKX3-1Q99801 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.6■□□□□ 0.73
NKX3-1Q99801 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
NKX3-1Q99801 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NKX3-1Q99801 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NKX3-1Q99801 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX3-1Q99801 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX3-1Q99801 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NKX3-1Q99801 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX3-1Q99801 TSPY13P-201ENST00000338964 914 ntBASIC19.59■□□□□ 0.73
NKX3-1Q99801 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NKX3-1Q99801 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
NKX3-1Q99801 AC004987.1-201ENST00000428627 508 ntBASIC19.59■□□□□ 0.73
NKX3-1Q99801 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
NKX3-1Q99801 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC19.59■□□□□ 0.73
NKX3-1Q99801 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX3-1Q99801 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX3-1Q99801 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX3-1Q99801 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
NKX3-1Q99801 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
NKX3-1Q99801 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
NKX3-1Q99801 LONRF2P2-201ENST00000439212 571 ntBASIC19.58■□□□□ 0.72
NKX3-1Q99801 DUX4L18-201ENST00000553347 1267 ntBASIC19.58■□□□□ 0.72
NKX3-1Q99801 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
NKX3-1Q99801 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
NKX3-1Q99801 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NKX3-1Q99801 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NKX3-1Q99801 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.58■□□□□ 0.72
NKX3-1Q99801 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NKX3-1Q99801 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.57■□□□□ 0.72
NKX3-1Q99801 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX3-1Q99801 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX3-1Q99801 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX3-1Q99801 AC131274.2-201ENST00000580697 1507 ntBASIC19.57■□□□□ 0.72
NKX3-1Q99801 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.57■□□□□ 0.72
NKX3-1Q99801 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX3-1Q99801 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX3-1Q99801 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
NKX3-1Q99801 ATP5G2P3-201ENST00000429083 425 ntBASIC19.57■□□□□ 0.72
NKX3-1Q99801 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NKX3-1Q99801 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NKX3-1Q99801 SSSCA1-AS1-201ENST00000567594 614 ntBASIC19.57■□□□□ 0.72
NKX3-1Q99801 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC19.57■□□□□ 0.72
NKX3-1Q99801 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX3-1Q99801 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX3-1Q99801 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX3-1Q99801 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX3-1Q99801 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
NKX3-1Q99801 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX3-1Q99801 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX3-1Q99801 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX3-1Q99801 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.56■□□□□ 0.72
NKX3-1Q99801 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
NKX3-1Q99801 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC19.56■□□□□ 0.72
NKX3-1Q99801 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX3-1Q99801 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX3-1Q99801 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NKX3-1Q99801 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX3-1Q99801 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX3-1Q99801 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX3-1Q99801 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX3-1Q99801 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX3-1Q99801 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.55■□□□□ 0.72
NKX3-1Q99801 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX3-1Q99801 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19.55■□□□□ 0.72
NKX3-1Q99801 AL022069.1-201ENST00000568025 1636 ntBASIC19.55■□□□□ 0.72
NKX3-1Q99801 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX3-1Q99801 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
NKX3-1Q99801 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NKX3-1Q99801 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NKX3-1Q99801 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX3-1Q99801 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19.55■□□□□ 0.72
NKX3-1Q99801 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
NKX3-1Q99801 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
NKX3-1Q99801 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NKX3-1Q99801 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
NKX3-1Q99801 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
NKX3-1Q99801 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
NKX3-1Q99801 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.54■□□□□ 0.72
NKX3-1Q99801 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.54■□□□□ 0.72
NKX3-1Q99801 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
NKX3-1Q99801 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
NKX3-1Q99801 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NKX3-1Q99801 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NKX3-1Q99801 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
NKX3-1Q99801 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
NKX3-1Q99801 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NKX3-1Q99801 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms