Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 MIR4787-201ENST00000607364 84 ntBASIC21.25■□□□□ 0.99
COL21A1Q96P44 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL21A1Q96P44 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL21A1Q96P44 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL21A1Q96P44 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL21A1Q96P44 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL21A1Q96P44 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL21A1Q96P44 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.24■□□□□ 0.99
COL21A1Q96P44 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.24■□□□□ 0.99
COL21A1Q96P44 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL21A1Q96P44 C9orf163-202ENST00000624034 2573 ntBASIC21.24■□□□□ 0.99
COL21A1Q96P44 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL21A1Q96P44 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.24■□□□□ 0.99
COL21A1Q96P44 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.24■□□□□ 0.99
COL21A1Q96P44 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL21A1Q96P44 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.24■□□□□ 0.99
COL21A1Q96P44 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL21A1Q96P44 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL21A1Q96P44 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
COL21A1Q96P44 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
COL21A1Q96P44 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.23■□□□□ 0.99
COL21A1Q96P44 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.23■□□□□ 0.99
COL21A1Q96P44 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL21A1Q96P44 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
COL21A1Q96P44 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL21A1Q96P44 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL21A1Q96P44 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL21A1Q96P44 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL21A1Q96P44 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.22■□□□□ 0.99
COL21A1Q96P44 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.22■□□□□ 0.99
COL21A1Q96P44 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL21A1Q96P44 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.22■□□□□ 0.99
COL21A1Q96P44 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL21A1Q96P44 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL21A1Q96P44 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL21A1Q96P44 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.21■□□□□ 0.99
COL21A1Q96P44 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL21A1Q96P44 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.21■□□□□ 0.99
COL21A1Q96P44 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
COL21A1Q96P44 AC131274.2-201ENST00000580697 1507 ntBASIC21.21■□□□□ 0.99
COL21A1Q96P44 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL21A1Q96P44 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL21A1Q96P44 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.21■□□□□ 0.99
COL21A1Q96P44 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL21A1Q96P44 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.21■□□□□ 0.99
COL21A1Q96P44 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.21■□□□□ 0.99
COL21A1Q96P44 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.21■□□□□ 0.99
COL21A1Q96P44 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.21■□□□□ 0.99
COL21A1Q96P44 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
COL21A1Q96P44 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
COL21A1Q96P44 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.99
COL21A1Q96P44 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.2■□□□□ 0.98
COL21A1Q96P44 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.2■□□□□ 0.98
COL21A1Q96P44 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL21A1Q96P44 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.2■□□□□ 0.98
COL21A1Q96P44 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL21A1Q96P44 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.2■□□□□ 0.98
COL21A1Q96P44 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.2■□□□□ 0.98
COL21A1Q96P44 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL21A1Q96P44 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL21A1Q96P44 AC092028.1-203ENST00000608262 953 ntBASIC21.2■□□□□ 0.98
COL21A1Q96P44 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL21A1Q96P44 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
COL21A1Q96P44 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL21A1Q96P44 ANOS2P-203ENST00000472227 1816 ntBASIC21.2■□□□□ 0.98
COL21A1Q96P44 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL21A1Q96P44 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL21A1Q96P44 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL21A1Q96P44 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL21A1Q96P44 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL21A1Q96P44 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL21A1Q96P44 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
COL21A1Q96P44 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.19■□□□□ 0.98
COL21A1Q96P44 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.19■□□□□ 0.98
COL21A1Q96P44 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL21A1Q96P44 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL21A1Q96P44 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL21A1Q96P44 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL21A1Q96P44 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.19■□□□□ 0.98
COL21A1Q96P44 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
COL21A1Q96P44 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL21A1Q96P44 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL21A1Q96P44 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.19■□□□□ 0.98
COL21A1Q96P44 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL21A1Q96P44 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL21A1Q96P44 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.18■□□□□ 0.98
COL21A1Q96P44 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL21A1Q96P44 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.18■□□□□ 0.98
COL21A1Q96P44 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
COL21A1Q96P44 AC004448.1-201ENST00000458332 883 ntBASIC21.18■□□□□ 0.98
COL21A1Q96P44 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL21A1Q96P44 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL21A1Q96P44 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.18■□□□□ 0.98
COL21A1Q96P44 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL21A1Q96P44 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL21A1Q96P44 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL21A1Q96P44 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.17■□□□□ 0.98
COL21A1Q96P44 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL21A1Q96P44 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL21A1Q96P44 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms