Protein–RNA interactions for Protein: Q96EY7

PTCD3, Pentatricopeptide repeat domain-containing protein 3, mitochondrial, humanhuman

Known RBP Predictions only

Length 689 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3Q96EY7 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
PTCD3Q96EY7 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC22.41■■□□□ 1.18
PTCD3Q96EY7 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PTCD3Q96EY7 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PTCD3Q96EY7 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
PTCD3Q96EY7 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PTCD3Q96EY7 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PTCD3Q96EY7 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
PTCD3Q96EY7 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC22.41■■□□□ 1.18
PTCD3Q96EY7 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC22.41■■□□□ 1.18
PTCD3Q96EY7 AC010980.1-201ENST00000587192 1142 ntBASIC22.41■■□□□ 1.18
PTCD3Q96EY7 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC22.41■■□□□ 1.18
PTCD3Q96EY7 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC22.41■■□□□ 1.18
PTCD3Q96EY7 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC22.41■■□□□ 1.18
PTCD3Q96EY7 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PTCD3Q96EY7 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
PTCD3Q96EY7 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
PTCD3Q96EY7 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC22.4■■□□□ 1.18
PTCD3Q96EY7 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
PTCD3Q96EY7 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
PTCD3Q96EY7 BEX3-202ENST00000372634 753 ntTSL 2 BASIC22.4■■□□□ 1.18
PTCD3Q96EY7 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC22.4■■□□□ 1.18
PTCD3Q96EY7 PVT1_1.1-201ENST00000615125 194 ntBASIC22.4■■□□□ 1.18
PTCD3Q96EY7 WWC2-AS2-201ENST00000578387 2183 ntBASIC22.4■■□□□ 1.18
PTCD3Q96EY7 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
PTCD3Q96EY7 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
PTCD3Q96EY7 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
PTCD3Q96EY7 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
PTCD3Q96EY7 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
PTCD3Q96EY7 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
PTCD3Q96EY7 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC22.39■■□□□ 1.18
PTCD3Q96EY7 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
PTCD3Q96EY7 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC22.39■■□□□ 1.17
PTCD3Q96EY7 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC22.39■■□□□ 1.17
PTCD3Q96EY7 ECEL1P1-201ENST00000373592 1742 ntBASIC22.39■■□□□ 1.17
PTCD3Q96EY7 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
PTCD3Q96EY7 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC22.39■■□□□ 1.17
PTCD3Q96EY7 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC22.38■■□□□ 1.17
PTCD3Q96EY7 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC22.38■■□□□ 1.17
PTCD3Q96EY7 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
PTCD3Q96EY7 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
PTCD3Q96EY7 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
PTCD3Q96EY7 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC22.38■■□□□ 1.17
PTCD3Q96EY7 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
PTCD3Q96EY7 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC22.38■■□□□ 1.17
PTCD3Q96EY7 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC22.38■■□□□ 1.17
PTCD3Q96EY7 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
PTCD3Q96EY7 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
PTCD3Q96EY7 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC22.38■■□□□ 1.17
PTCD3Q96EY7 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC22.38■■□□□ 1.17
PTCD3Q96EY7 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC22.38■■□□□ 1.17
PTCD3Q96EY7 AC007375.3-201ENST00000600936 2314 ntBASIC22.37■■□□□ 1.17
PTCD3Q96EY7 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
PTCD3Q96EY7 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
PTCD3Q96EY7 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
PTCD3Q96EY7 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
PTCD3Q96EY7 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC22.37■■□□□ 1.17
PTCD3Q96EY7 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC22.37■■□□□ 1.17
PTCD3Q96EY7 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC22.37■■□□□ 1.17
PTCD3Q96EY7 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
PTCD3Q96EY7 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
PTCD3Q96EY7 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC22.36■■□□□ 1.17
PTCD3Q96EY7 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PTCD3Q96EY7 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
PTCD3Q96EY7 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
PTCD3Q96EY7 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PTCD3Q96EY7 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC22.35■■□□□ 1.17
PTCD3Q96EY7 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
PTCD3Q96EY7 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PTCD3Q96EY7 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
PTCD3Q96EY7 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC22.35■■□□□ 1.17
PTCD3Q96EY7 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
PTCD3Q96EY7 AC092068.2-201ENST00000590491 1708 ntBASIC22.35■■□□□ 1.17
PTCD3Q96EY7 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PTCD3Q96EY7 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC22.35■■□□□ 1.17
PTCD3Q96EY7 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC22.35■■□□□ 1.17
PTCD3Q96EY7 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
PTCD3Q96EY7 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
PTCD3Q96EY7 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PTCD3Q96EY7 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
PTCD3Q96EY7 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC22.34■■□□□ 1.17
PTCD3Q96EY7 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
PTCD3Q96EY7 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
PTCD3Q96EY7 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
PTCD3Q96EY7 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
PTCD3Q96EY7 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC22.34■■□□□ 1.17
PTCD3Q96EY7 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC22.34■■□□□ 1.17
PTCD3Q96EY7 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
PTCD3Q96EY7 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
PTCD3Q96EY7 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
PTCD3Q96EY7 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
PTCD3Q96EY7 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
PTCD3Q96EY7 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
PTCD3Q96EY7 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
PTCD3Q96EY7 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
PTCD3Q96EY7 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
PTCD3Q96EY7 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PTCD3Q96EY7 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC22.32■■□□□ 1.16
PTCD3Q96EY7 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
PTCD3Q96EY7 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms