Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM40Q6P9F5 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM40Q6P9F5 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM40Q6P9F5 AC005703.6-201ENST00000623265 1329 ntBASIC21.63■■□□□ 1.05
TRIM40Q6P9F5 UNC93B8-201ENST00000511903 705 ntBASIC21.63■■□□□ 1.05
TRIM40Q6P9F5 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.63■■□□□ 1.05
TRIM40Q6P9F5 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.63■■□□□ 1.05
TRIM40Q6P9F5 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
TRIM40Q6P9F5 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM40Q6P9F5 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM40Q6P9F5 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM40Q6P9F5 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.62■■□□□ 1.05
TRIM40Q6P9F5 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.62■■□□□ 1.05
TRIM40Q6P9F5 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
TRIM40Q6P9F5 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM40Q6P9F5 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM40Q6P9F5 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.62■■□□□ 1.05
TRIM40Q6P9F5 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
TRIM40Q6P9F5 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.61■■□□□ 1.05
TRIM40Q6P9F5 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.61■■□□□ 1.05
TRIM40Q6P9F5 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.61■■□□□ 1.05
TRIM40Q6P9F5 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TRIM40Q6P9F5 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.61■■□□□ 1.05
TRIM40Q6P9F5 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.61■■□□□ 1.05
TRIM40Q6P9F5 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
TRIM40Q6P9F5 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.61■■□□□ 1.05
TRIM40Q6P9F5 KRT16P3-201ENST00000439127 1283 ntBASIC21.61■■□□□ 1.05
TRIM40Q6P9F5 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TRIM40Q6P9F5 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.61■■□□□ 1.05
TRIM40Q6P9F5 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.61■■□□□ 1.05
TRIM40Q6P9F5 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.61■■□□□ 1.05
TRIM40Q6P9F5 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
TRIM40Q6P9F5 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM40Q6P9F5 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.6■■□□□ 1.05
TRIM40Q6P9F5 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM40Q6P9F5 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM40Q6P9F5 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
TRIM40Q6P9F5 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM40Q6P9F5 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.6■■□□□ 1.05
TRIM40Q6P9F5 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.6■■□□□ 1.05
TRIM40Q6P9F5 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.6■■□□□ 1.05
TRIM40Q6P9F5 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
TRIM40Q6P9F5 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM40Q6P9F5 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
TRIM40Q6P9F5 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM40Q6P9F5 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM40Q6P9F5 AC133561.1-201ENST00000568600 2415 ntBASIC21.59■■□□□ 1.05
TRIM40Q6P9F5 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM40Q6P9F5 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM40Q6P9F5 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM40Q6P9F5 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.59■■□□□ 1.05
TRIM40Q6P9F5 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM40Q6P9F5 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
TRIM40Q6P9F5 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
TRIM40Q6P9F5 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM40Q6P9F5 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM40Q6P9F5 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.59■■□□□ 1.05
TRIM40Q6P9F5 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
TRIM40Q6P9F5 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM40Q6P9F5 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM40Q6P9F5 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.59■■□□□ 1.05
TRIM40Q6P9F5 AC068473.5-201ENST00000616428 2072 ntBASIC21.59■■□□□ 1.05
TRIM40Q6P9F5 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM40Q6P9F5 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM40Q6P9F5 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRIM40Q6P9F5 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRIM40Q6P9F5 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TRIM40Q6P9F5 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.58■■□□□ 1.05
TRIM40Q6P9F5 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRIM40Q6P9F5 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.58■■□□□ 1.05
TRIM40Q6P9F5 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRIM40Q6P9F5 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.58■■□□□ 1.05
TRIM40Q6P9F5 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.58■■□□□ 1.05
TRIM40Q6P9F5 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
TRIM40Q6P9F5 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
TRIM40Q6P9F5 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.58■■□□□ 1.05
TRIM40Q6P9F5 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRIM40Q6P9F5 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
TRIM40Q6P9F5 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.58■■□□□ 1.04
TRIM40Q6P9F5 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.58■■□□□ 1.04
TRIM40Q6P9F5 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
TRIM40Q6P9F5 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.58■■□□□ 1.04
TRIM40Q6P9F5 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
TRIM40Q6P9F5 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.57■■□□□ 1.04
TRIM40Q6P9F5 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRIM40Q6P9F5 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.57■■□□□ 1.04
TRIM40Q6P9F5 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.57■■□□□ 1.04
TRIM40Q6P9F5 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TRIM40Q6P9F5 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM40Q6P9F5 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
TRIM40Q6P9F5 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.56■■□□□ 1.04
TRIM40Q6P9F5 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM40Q6P9F5 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM40Q6P9F5 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
TRIM40Q6P9F5 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM40Q6P9F5 MIR6724-1-201ENST00000616420 92 ntBASIC21.56■■□□□ 1.04
TRIM40Q6P9F5 MIR6724-2-201ENST00000616483 92 ntBASIC21.56■■□□□ 1.04
TRIM40Q6P9F5 MIR6724-4-201ENST00000617390 92 ntBASIC21.56■■□□□ 1.04
TRIM40Q6P9F5 MIR6724-3-201ENST00000622482 92 ntBASIC21.56■■□□□ 1.04
TRIM40Q6P9F5 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms