Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
NIPAL3Q6P499 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NIPAL3Q6P499 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NIPAL3Q6P499 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.5■□□□□ 0.87
NIPAL3Q6P499 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
NIPAL3Q6P499 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
NIPAL3Q6P499 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.5■□□□□ 0.87
NIPAL3Q6P499 AC009299.2-201ENST00000482477 511 ntBASIC20.5■□□□□ 0.87
NIPAL3Q6P499 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.5■□□□□ 0.87
NIPAL3Q6P499 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
NIPAL3Q6P499 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
NIPAL3Q6P499 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
NIPAL3Q6P499 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NIPAL3Q6P499 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.5■□□□□ 0.87
NIPAL3Q6P499 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NIPAL3Q6P499 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
NIPAL3Q6P499 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NIPAL3Q6P499 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.5■□□□□ 0.87
NIPAL3Q6P499 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
NIPAL3Q6P499 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
NIPAL3Q6P499 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.5■□□□□ 0.87
NIPAL3Q6P499 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
NIPAL3Q6P499 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
NIPAL3Q6P499 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NIPAL3Q6P499 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.49■□□□□ 0.87
NIPAL3Q6P499 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NIPAL3Q6P499 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NIPAL3Q6P499 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
NIPAL3Q6P499 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NIPAL3Q6P499 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NIPAL3Q6P499 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.48■□□□□ 0.87
NIPAL3Q6P499 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.48■□□□□ 0.87
NIPAL3Q6P499 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
NIPAL3Q6P499 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
NIPAL3Q6P499 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
NIPAL3Q6P499 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NIPAL3Q6P499 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.47■□□□□ 0.87
NIPAL3Q6P499 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.47■□□□□ 0.87
NIPAL3Q6P499 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NIPAL3Q6P499 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NIPAL3Q6P499 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
NIPAL3Q6P499 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
NIPAL3Q6P499 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NIPAL3Q6P499 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.47■□□□□ 0.87
NIPAL3Q6P499 AC233723.2-201ENST00000623798 2106 ntBASIC20.47■□□□□ 0.87
NIPAL3Q6P499 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
NIPAL3Q6P499 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.47■□□□□ 0.87
NIPAL3Q6P499 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NIPAL3Q6P499 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NIPAL3Q6P499 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.47■□□□□ 0.87
NIPAL3Q6P499 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
NIPAL3Q6P499 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
NIPAL3Q6P499 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
NIPAL3Q6P499 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
NIPAL3Q6P499 AL022069.1-201ENST00000568025 1636 ntBASIC20.46■□□□□ 0.87
NIPAL3Q6P499 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NIPAL3Q6P499 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.46■□□□□ 0.87
NIPAL3Q6P499 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
NIPAL3Q6P499 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
NIPAL3Q6P499 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NIPAL3Q6P499 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
NIPAL3Q6P499 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NIPAL3Q6P499 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
NIPAL3Q6P499 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NIPAL3Q6P499 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
NIPAL3Q6P499 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.45■□□□□ 0.86
NIPAL3Q6P499 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NIPAL3Q6P499 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NIPAL3Q6P499 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.45■□□□□ 0.86
NIPAL3Q6P499 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.45■□□□□ 0.86
NIPAL3Q6P499 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.45■□□□□ 0.86
NIPAL3Q6P499 KRT125P-201ENST00000546827 989 ntBASIC20.45■□□□□ 0.86
NIPAL3Q6P499 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.45■□□□□ 0.86
NIPAL3Q6P499 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NIPAL3Q6P499 AC131274.2-201ENST00000580697 1507 ntBASIC20.44■□□□□ 0.86
NIPAL3Q6P499 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NIPAL3Q6P499 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
NIPAL3Q6P499 AC239859.2-201ENST00000444165 318 ntBASIC20.44■□□□□ 0.86
NIPAL3Q6P499 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
NIPAL3Q6P499 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.44■□□□□ 0.86
NIPAL3Q6P499 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.44■□□□□ 0.86
NIPAL3Q6P499 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NIPAL3Q6P499 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
NIPAL3Q6P499 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
NIPAL3Q6P499 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
NIPAL3Q6P499 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NIPAL3Q6P499 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NIPAL3Q6P499 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NIPAL3Q6P499 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
NIPAL3Q6P499 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NIPAL3Q6P499 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NIPAL3Q6P499 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
NIPAL3Q6P499 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NIPAL3Q6P499 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
NIPAL3Q6P499 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.43■□□□□ 0.86
NIPAL3Q6P499 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.43■□□□□ 0.86
NIPAL3Q6P499 Z92544.1-202ENST00000571933 1220 ntBASIC20.43■□□□□ 0.86
NIPAL3Q6P499 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
NIPAL3Q6P499 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NIPAL3Q6P499 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms