Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PRKDCP78527 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PRKDCP78527 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PRKDCP78527 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
PRKDCP78527 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PRKDCP78527 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PRKDCP78527 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PRKDCP78527 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
PRKDCP78527 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC16.69■□□□□ 0.26
PRKDCP78527 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PRKDCP78527 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
PRKDCP78527 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PRKDCP78527 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PRKDCP78527 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PRKDCP78527 GALNS-213ENST00000569433 723 ntTSL 3 BASIC16.68■□□□□ 0.26
PRKDCP78527 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC16.68■□□□□ 0.26
PRKDCP78527 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
PRKDCP78527 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PRKDCP78527 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
PRKDCP78527 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PRKDCP78527 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PRKDCP78527 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PRKDCP78527 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC16.68■□□□□ 0.26
PRKDCP78527 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PRKDCP78527 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PRKDCP78527 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC16.67■□□□□ 0.26
PRKDCP78527 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC16.67■□□□□ 0.26
PRKDCP78527 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PRKDCP78527 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PRKDCP78527 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC16.67■□□□□ 0.26
PRKDCP78527 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PRKDCP78527 COX20-201ENST00000366528 568 ntTSL 2 BASIC16.67■□□□□ 0.26
PRKDCP78527 AC087239.1-201ENST00000622671 572 ntBASIC16.67■□□□□ 0.26
PRKDCP78527 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
PRKDCP78527 AC091060.1-201ENST00000623524 1766 ntBASIC16.67■□□□□ 0.26
PRKDCP78527 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC16.67■□□□□ 0.26
PRKDCP78527 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC16.67■□□□□ 0.26
PRKDCP78527 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC16.67■□□□□ 0.26
PRKDCP78527 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PRKDCP78527 AC142472.1-201ENST00000612013 1741 ntBASIC16.66■□□□□ 0.26
PRKDCP78527 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PRKDCP78527 NKILA-201ENST00000613231 537 ntTSL 4 BASIC16.66■□□□□ 0.26
PRKDCP78527 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PRKDCP78527 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC16.66■□□□□ 0.26
PRKDCP78527 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PRKDCP78527 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC16.66■□□□□ 0.26
PRKDCP78527 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PRKDCP78527 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PRKDCP78527 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PRKDCP78527 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
PRKDCP78527 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PRKDCP78527 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PRKDCP78527 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PRKDCP78527 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC16.65■□□□□ 0.26
PRKDCP78527 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC16.65■□□□□ 0.26
PRKDCP78527 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC16.65■□□□□ 0.26
PRKDCP78527 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PRKDCP78527 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC16.64■□□□□ 0.26
PRKDCP78527 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC16.64■□□□□ 0.26
PRKDCP78527 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
PRKDCP78527 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
PRKDCP78527 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PRKDCP78527 AC073210.2-201ENST00000430369 194 ntBASIC16.64■□□□□ 0.25
PRKDCP78527 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
PRKDCP78527 AC011767.1-201ENST00000617410 1153 ntBASIC16.64■□□□□ 0.25
PRKDCP78527 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PRKDCP78527 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PRKDCP78527 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PRKDCP78527 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC16.64■□□□□ 0.25
PRKDCP78527 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC16.64■□□□□ 0.25
PRKDCP78527 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PRKDCP78527 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
PRKDCP78527 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PRKDCP78527 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC16.64■□□□□ 0.25
PRKDCP78527 SMUG1P1-201ENST00000590640 811 ntBASIC16.64■□□□□ 0.25
PRKDCP78527 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PRKDCP78527 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC16.63■□□□□ 0.25
PRKDCP78527 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC16.63■□□□□ 0.25
PRKDCP78527 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC16.63■□□□□ 0.25
PRKDCP78527 MFSD11-216ENST00000590393 1141 ntBASIC16.63■□□□□ 0.25
PRKDCP78527 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
PRKDCP78527 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PRKDCP78527 CASP6-205ENST00000505486 538 ntTSL 4 BASIC16.63■□□□□ 0.25
PRKDCP78527 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKDCP78527 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PRKDCP78527 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC16.62■□□□□ 0.25
PRKDCP78527 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
PRKDCP78527 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PRKDCP78527 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PRKDCP78527 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
PRKDCP78527 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PRKDCP78527 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PRKDCP78527 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC16.62■□□□□ 0.25
PRKDCP78527 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PRKDCP78527 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC16.62■□□□□ 0.25
PRKDCP78527 AC096887.2-201ENST00000623443 1957 ntBASIC16.62■□□□□ 0.25
PRKDCP78527 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PRKDCP78527 GCSHP5-201ENST00000443090 522 ntBASIC16.62■□□□□ 0.25
PRKDCP78527 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PRKDCP78527 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms