Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.33■□□□□ 0.85
LSM3P62310 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
LSM3P62310 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.33■□□□□ 0.84
LSM3P62310 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
LSM3P62310 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LSM3P62310 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LSM3P62310 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
LSM3P62310 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.32■□□□□ 0.84
LSM3P62310 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
LSM3P62310 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.31■□□□□ 0.84
LSM3P62310 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LSM3P62310 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LSM3P62310 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
LSM3P62310 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
LSM3P62310 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
LSM3P62310 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.31■□□□□ 0.84
LSM3P62310 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LSM3P62310 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
LSM3P62310 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.3■□□□□ 0.84
LSM3P62310 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LSM3P62310 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.3■□□□□ 0.84
LSM3P62310 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.3■□□□□ 0.84
LSM3P62310 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LSM3P62310 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LSM3P62310 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LSM3P62310 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC20.3■□□□□ 0.84
LSM3P62310 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LSM3P62310 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.3■□□□□ 0.84
LSM3P62310 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.3■□□□□ 0.84
LSM3P62310 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LSM3P62310 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LSM3P62310 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LSM3P62310 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LSM3P62310 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.29■□□□□ 0.84
LSM3P62310 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LSM3P62310 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
LSM3P62310 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC20.29■□□□□ 0.84
LSM3P62310 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.29■□□□□ 0.84
LSM3P62310 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LSM3P62310 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LSM3P62310 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LSM3P62310 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LSM3P62310 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
LSM3P62310 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LSM3P62310 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LSM3P62310 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.28■□□□□ 0.84
LSM3P62310 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
LSM3P62310 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LSM3P62310 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
LSM3P62310 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.28■□□□□ 0.84
LSM3P62310 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
LSM3P62310 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LSM3P62310 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
LSM3P62310 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
LSM3P62310 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.27■□□□□ 0.84
LSM3P62310 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
LSM3P62310 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
LSM3P62310 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
LSM3P62310 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LSM3P62310 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.27■□□□□ 0.84
LSM3P62310 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
LSM3P62310 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LSM3P62310 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.27■□□□□ 0.83
LSM3P62310 AC073130.3-201ENST00000624389 2278 ntBASIC20.27■□□□□ 0.83
LSM3P62310 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LSM3P62310 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LSM3P62310 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LSM3P62310 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
LSM3P62310 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LSM3P62310 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LSM3P62310 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
LSM3P62310 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LSM3P62310 DUX4L29-201ENST00000425409 679 ntBASIC20.26■□□□□ 0.83
LSM3P62310 HLA-V-202ENST00000446817 847 ntBASIC20.26■□□□□ 0.83
LSM3P62310 BOD1-206ENST00000480951 814 ntTSL 2 BASIC20.26■□□□□ 0.83
LSM3P62310 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC20.26■□□□□ 0.83
LSM3P62310 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LSM3P62310 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
LSM3P62310 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
LSM3P62310 FBXW4P1-201ENST00000426721 2239 ntBASIC20.26■□□□□ 0.83
LSM3P62310 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.25■□□□□ 0.83
LSM3P62310 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.25■□□□□ 0.83
LSM3P62310 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
LSM3P62310 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LSM3P62310 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC20.25■□□□□ 0.83
LSM3P62310 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LSM3P62310 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LSM3P62310 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
LSM3P62310 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LSM3P62310 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.24■□□□□ 0.83
LSM3P62310 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LSM3P62310 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LSM3P62310 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
LSM3P62310 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LSM3P62310 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.24■□□□□ 0.83
LSM3P62310 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LSM3P62310 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
LSM3P62310 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
LSM3P62310 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LSM3P62310 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms