Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.45■■□□□ 1.02
PTPN6P29350 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PTPN6P29350 AC120024.1-201ENST00000562672 995 ntBASIC21.45■■□□□ 1.02
PTPN6P29350 AC233723.2-201ENST00000623798 2106 ntBASIC21.45■■□□□ 1.02
PTPN6P29350 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTPN6P29350 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
PTPN6P29350 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTPN6P29350 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.45■■□□□ 1.02
PTPN6P29350 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
PTPN6P29350 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
PTPN6P29350 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
PTPN6P29350 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PTPN6P29350 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTPN6P29350 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN6P29350 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
PTPN6P29350 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.44■■□□□ 1.02
PTPN6P29350 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN6P29350 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN6P29350 THA1P-201ENST00000590384 1145 ntBASIC21.44■■□□□ 1.02
PTPN6P29350 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN6P29350 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.44■■□□□ 1.02
PTPN6P29350 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN6P29350 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTPN6P29350 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.44■■□□□ 1.02
PTPN6P29350 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN6P29350 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
PTPN6P29350 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN6P29350 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN6P29350 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN6P29350 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.43■■□□□ 1.02
PTPN6P29350 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN6P29350 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN6P29350 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN6P29350 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN6P29350 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
PTPN6P29350 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN6P29350 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN6P29350 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN6P29350 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN6P29350 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.43■■□□□ 1.02
PTPN6P29350 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTPN6P29350 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PTPN6P29350 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
PTPN6P29350 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PTPN6P29350 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PTPN6P29350 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
PTPN6P29350 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.42■■□□□ 1.02
PTPN6P29350 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.42■■□□□ 1.02
PTPN6P29350 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
PTPN6P29350 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PTPN6P29350 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PTPN6P29350 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN6P29350 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.41■■□□□ 1.02
PTPN6P29350 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN6P29350 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN6P29350 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN6P29350 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN6P29350 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN6P29350 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN6P29350 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.41■■□□□ 1.02
PTPN6P29350 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN6P29350 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN6P29350 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN6P29350 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.4■■□□□ 1.02
PTPN6P29350 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN6P29350 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN6P29350 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN6P29350 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN6P29350 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.4■■□□□ 1.02
PTPN6P29350 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN6P29350 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.4■■□□□ 1.02
PTPN6P29350 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN6P29350 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN6P29350 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN6P29350 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PTPN6P29350 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.39■■□□□ 1.01
PTPN6P29350 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PTPN6P29350 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.39■■□□□ 1.01
PTPN6P29350 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
PTPN6P29350 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.39■■□□□ 1.01
PTPN6P29350 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
PTPN6P29350 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PTPN6P29350 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PTPN6P29350 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTPN6P29350 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTPN6P29350 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PTPN6P29350 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTPN6P29350 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTPN6P29350 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.38■■□□□ 1.01
PTPN6P29350 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.38■■□□□ 1.01
PTPN6P29350 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.38■■□□□ 1.01
PTPN6P29350 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.38■■□□□ 1.01
PTPN6P29350 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTPN6P29350 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PTPN6P29350 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
PTPN6P29350 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
PTPN6P29350 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PTPN6P29350 EP400NL-214ENST00000641289 2402 ntBASIC21.37■■□□□ 1.01
PTPN6P29350 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PTPN6P29350 AF131216.4-201ENST00000638924 1588 ntBASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms