Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.6■■□□□ 1.05
SEMA3DO95025 AL451085.2-201ENST00000605085 799 ntBASIC21.6■■□□□ 1.05
SEMA3DO95025 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.6■■□□□ 1.05
SEMA3DO95025 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.6■■□□□ 1.05
SEMA3DO95025 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
SEMA3DO95025 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SEMA3DO95025 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SEMA3DO95025 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SEMA3DO95025 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
SEMA3DO95025 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SEMA3DO95025 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SEMA3DO95025 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SEMA3DO95025 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SEMA3DO95025 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SEMA3DO95025 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.59■■□□□ 1.05
SEMA3DO95025 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SEMA3DO95025 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.59■■□□□ 1.05
SEMA3DO95025 AC092028.1-203ENST00000608262 953 ntBASIC21.59■■□□□ 1.05
SEMA3DO95025 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.59■■□□□ 1.05
SEMA3DO95025 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.59■■□□□ 1.05
SEMA3DO95025 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SEMA3DO95025 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SEMA3DO95025 AC012676.1-201ENST00000574705 1949 ntBASIC21.59■■□□□ 1.05
SEMA3DO95025 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.58■■□□□ 1.05
SEMA3DO95025 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.58■■□□□ 1.05
SEMA3DO95025 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SEMA3DO95025 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.58■■□□□ 1.05
SEMA3DO95025 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.58■■□□□ 1.05
SEMA3DO95025 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
SEMA3DO95025 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SEMA3DO95025 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
SEMA3DO95025 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
SEMA3DO95025 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SEMA3DO95025 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SEMA3DO95025 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.57■■□□□ 1.04
SEMA3DO95025 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.57■■□□□ 1.04
SEMA3DO95025 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SEMA3DO95025 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.57■■□□□ 1.04
SEMA3DO95025 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
SEMA3DO95025 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
SEMA3DO95025 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.57■■□□□ 1.04
SEMA3DO95025 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SEMA3DO95025 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SEMA3DO95025 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.56■■□□□ 1.04
SEMA3DO95025 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.56■■□□□ 1.04
SEMA3DO95025 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SEMA3DO95025 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.56■■□□□ 1.04
SEMA3DO95025 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SEMA3DO95025 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
SEMA3DO95025 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SEMA3DO95025 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
SEMA3DO95025 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.56■■□□□ 1.04
SEMA3DO95025 MIR4787-201ENST00000607364 84 ntBASIC21.56■■□□□ 1.04
SEMA3DO95025 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SEMA3DO95025 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SEMA3DO95025 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
SEMA3DO95025 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SEMA3DO95025 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SEMA3DO95025 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SEMA3DO95025 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.56■■□□□ 1.04
SEMA3DO95025 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SEMA3DO95025 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SEMA3DO95025 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
SEMA3DO95025 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.55■■□□□ 1.04
SEMA3DO95025 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SEMA3DO95025 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.55■■□□□ 1.04
SEMA3DO95025 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SEMA3DO95025 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.55■■□□□ 1.04
SEMA3DO95025 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.55■■□□□ 1.04
SEMA3DO95025 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
SEMA3DO95025 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SEMA3DO95025 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.55■■□□□ 1.04
SEMA3DO95025 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SEMA3DO95025 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SEMA3DO95025 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
SEMA3DO95025 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.55■■□□□ 1.04
SEMA3DO95025 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.55■■□□□ 1.04
SEMA3DO95025 AC005703.6-201ENST00000623265 1329 ntBASIC21.55■■□□□ 1.04
SEMA3DO95025 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.54■■□□□ 1.04
SEMA3DO95025 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
SEMA3DO95025 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SEMA3DO95025 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SEMA3DO95025 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.54■■□□□ 1.04
SEMA3DO95025 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SEMA3DO95025 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.53■■□□□ 1.04
SEMA3DO95025 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
SEMA3DO95025 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SEMA3DO95025 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SEMA3DO95025 AC239859.2-201ENST00000444165 318 ntBASIC21.53■■□□□ 1.04
SEMA3DO95025 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SEMA3DO95025 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
SEMA3DO95025 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SEMA3DO95025 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SEMA3DO95025 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SEMA3DO95025 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.53■■□□□ 1.04
SEMA3DO95025 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
SEMA3DO95025 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
SEMA3DO95025 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.52■■□□□ 1.04
SEMA3DO95025 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
SEMA3DO95025 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms