Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SMIM28A0A1B0GU29 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SMIM28A0A1B0GU29 SHD-204ENST00000599689 1729 ntTSL 5 BASIC24.4■■□□□ 1.5
SMIM28A0A1B0GU29 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SMIM28A0A1B0GU29 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
SMIM28A0A1B0GU29 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC24.39■■□□□ 1.5
SMIM28A0A1B0GU29 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
SMIM28A0A1B0GU29 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC24.39■■□□□ 1.5
SMIM28A0A1B0GU29 AC006455.2-201ENST00000429931 906 ntBASIC24.39■■□□□ 1.49
SMIM28A0A1B0GU29 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
SMIM28A0A1B0GU29 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC24.39■■□□□ 1.49
SMIM28A0A1B0GU29 AC004812.2-201ENST00000611079 2094 ntBASIC24.39■■□□□ 1.49
SMIM28A0A1B0GU29 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
SMIM28A0A1B0GU29 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
SMIM28A0A1B0GU29 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC24.38■■□□□ 1.49
SMIM28A0A1B0GU29 PTCHD3P2-201ENST00000424937 1205 ntBASIC24.38■■□□□ 1.49
SMIM28A0A1B0GU29 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC24.38■■□□□ 1.49
SMIM28A0A1B0GU29 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC24.38■■□□□ 1.49
SMIM28A0A1B0GU29 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC24.38■■□□□ 1.49
SMIM28A0A1B0GU29 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
SMIM28A0A1B0GU29 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SMIM28A0A1B0GU29 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
SMIM28A0A1B0GU29 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
SMIM28A0A1B0GU29 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SMIM28A0A1B0GU29 EDA-201ENST00000338901 1233 ntBASIC24.37■■□□□ 1.49
SMIM28A0A1B0GU29 SUDS3P1-201ENST00000505831 966 ntBASIC24.37■■□□□ 1.49
SMIM28A0A1B0GU29 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SMIM28A0A1B0GU29 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
SMIM28A0A1B0GU29 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
SMIM28A0A1B0GU29 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
SMIM28A0A1B0GU29 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC24.36■■□□□ 1.49
SMIM28A0A1B0GU29 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
SMIM28A0A1B0GU29 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
SMIM28A0A1B0GU29 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
SMIM28A0A1B0GU29 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
SMIM28A0A1B0GU29 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SMIM28A0A1B0GU29 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC24.35■■□□□ 1.49
SMIM28A0A1B0GU29 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SMIM28A0A1B0GU29 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC24.35■■□□□ 1.49
SMIM28A0A1B0GU29 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC24.35■■□□□ 1.49
SMIM28A0A1B0GU29 AL138724.1-201ENST00000606771 1088 ntBASIC24.35■■□□□ 1.49
SMIM28A0A1B0GU29 AC009086.3-201ENST00000623486 1008 ntBASIC24.35■■□□□ 1.49
SMIM28A0A1B0GU29 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SMIM28A0A1B0GU29 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
SMIM28A0A1B0GU29 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC24.34■■□□□ 1.49
SMIM28A0A1B0GU29 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SMIM28A0A1B0GU29 AC142381.2-201ENST00000566120 298 ntBASIC24.34■■□□□ 1.49
SMIM28A0A1B0GU29 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC24.34■■□□□ 1.49
SMIM28A0A1B0GU29 AL355001.2-201ENST00000620617 1191 ntBASIC24.34■■□□□ 1.49
SMIM28A0A1B0GU29 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC24.34■■□□□ 1.49
SMIM28A0A1B0GU29 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SMIM28A0A1B0GU29 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
SMIM28A0A1B0GU29 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SMIM28A0A1B0GU29 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SMIM28A0A1B0GU29 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
SMIM28A0A1B0GU29 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC24.33■■□□□ 1.49
SMIM28A0A1B0GU29 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
SMIM28A0A1B0GU29 ASB1-202ENST00000409297 878 ntTSL 5 BASIC24.33■■□□□ 1.49
SMIM28A0A1B0GU29 PTMA-205ENST00000410064 814 ntTSL 2 BASIC24.33■■□□□ 1.49
SMIM28A0A1B0GU29 MIR4767-201ENST00000582827 78 ntBASIC24.33■■□□□ 1.49
SMIM28A0A1B0GU29 AC011298.3-201ENST00000615796 283 ntBASIC24.33■■□□□ 1.49
SMIM28A0A1B0GU29 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.48
SMIM28A0A1B0GU29 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
SMIM28A0A1B0GU29 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC24.32■■□□□ 1.48
SMIM28A0A1B0GU29 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
SMIM28A0A1B0GU29 PREB-202ENST00000406567 1910 ntTSL 5 BASIC24.32■■□□□ 1.48
SMIM28A0A1B0GU29 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
SMIM28A0A1B0GU29 HES6-206ENST00000409574 738 ntTSL 2 BASIC24.32■■□□□ 1.48
SMIM28A0A1B0GU29 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC24.32■■□□□ 1.48
SMIM28A0A1B0GU29 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC24.32■■□□□ 1.48
SMIM28A0A1B0GU29 MIR3181-201ENST00000578512 73 ntBASIC24.32■■□□□ 1.48
SMIM28A0A1B0GU29 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC24.32■■□□□ 1.48
SMIM28A0A1B0GU29 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
SMIM28A0A1B0GU29 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
SMIM28A0A1B0GU29 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
SMIM28A0A1B0GU29 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC24.31■■□□□ 1.48
SMIM28A0A1B0GU29 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SMIM28A0A1B0GU29 GRAMD4P4-201ENST00000613563 1115 ntBASIC24.31■■□□□ 1.48
SMIM28A0A1B0GU29 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC24.31■■□□□ 1.48
SMIM28A0A1B0GU29 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
SMIM28A0A1B0GU29 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
SMIM28A0A1B0GU29 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
SMIM28A0A1B0GU29 GTSE1-AS1-202ENST00000623117 1518 ntBASIC24.3■■□□□ 1.48
SMIM28A0A1B0GU29 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
SMIM28A0A1B0GU29 EBPL-204ENST00000378272 766 ntTSL 3 BASIC24.3■■□□□ 1.48
SMIM28A0A1B0GU29 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC24.3■■□□□ 1.48
SMIM28A0A1B0GU29 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
SMIM28A0A1B0GU29 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
SMIM28A0A1B0GU29 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
SMIM28A0A1B0GU29 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
SMIM28A0A1B0GU29 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC24.29■■□□□ 1.48
SMIM28A0A1B0GU29 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC24.29■■□□□ 1.48
SMIM28A0A1B0GU29 AL136967.2-201ENST00000623968 743 ntBASIC24.29■■□□□ 1.48
SMIM28A0A1B0GU29 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
SMIM28A0A1B0GU29 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC24.29■■□□□ 1.48
SMIM28A0A1B0GU29 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
SMIM28A0A1B0GU29 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
SMIM28A0A1B0GU29 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC24.28■■□□□ 1.48
SMIM28A0A1B0GU29 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC24.28■■□□□ 1.48
SMIM28A0A1B0GU29 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms