Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 KRT8P31-201ENST00000504812 1408 ntBASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC3Q9BQI4 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 AL627422.1-201ENST00000434104 580 ntBASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 CHCHD2P9-201ENST00000461726 456 ntBASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 AC124068.2-201ENST00000569473 1109 ntBASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 DRG2-220ENST00000583355 891 ntTSL 3 BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 AL022334.2-201ENST00000610000 484 ntBASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 AC087392.5-201ENST00000612517 489 ntBASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 AP001065.2-201ENST00000617205 644 ntBASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC3Q9BQI4 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 AC130709.1-201ENST00000484779 1212 ntBASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 NDUFS6P1-201ENST00000485187 316 ntBASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 AC114947.1-202ENST00000514136 344 ntBASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 DNM1P30-201ENST00000563586 452 ntBASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC3Q9BQI4 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC3Q9BQI4 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms