Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 AL008638.4-201ENST00000624792 1315 ntBASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 HMGA1P1-201ENST00000415560 1062 ntBASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 RPL18AP16-201ENST00000424057 531 ntBASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 TTTY18-201ENST00000438677 221 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 AL512310.5-201ENST00000551999 515 ntBASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 BMF-206ENST00000558774 671 ntTSL 3 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 AC020922.4-201ENST00000621389 339 ntBASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 RER1-203ENST00000378513 3000 ntTSL 3 BASIC17.08■□□□□ 0.33
CCDC88AQ3V6T2 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
CCDC88AQ3V6T2 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC88AQ3V6T2 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
CCDC88AQ3V6T2 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC17.08■□□□□ 0.33
CCDC88AQ3V6T2 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC88AQ3V6T2 AL022313.4-201ENST00000562756 2046 ntBASIC17.08■□□□□ 0.33
CCDC88AQ3V6T2 AC090340.1-201ENST00000620778 4980 ntBASIC17.08■□□□□ 0.33
CCDC88AQ3V6T2 PSME2P2-201ENST00000453033 700 ntBASIC17.08■□□□□ 0.33
CCDC88AQ3V6T2 AC112250.1-201ENST00000504640 745 ntBASIC17.08■□□□□ 0.33
CCDC88AQ3V6T2 AC011676.2-201ENST00000518520 584 ntTSL 2 BASIC17.08■□□□□ 0.33
CCDC88AQ3V6T2 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC17.08■□□□□ 0.33
CCDC88AQ3V6T2 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
CCDC88AQ3V6T2 BATF-202ENST00000555504 361 ntTSL 2 BASIC17.08■□□□□ 0.33
CCDC88AQ3V6T2 KF455155.1-201ENST00000604493 303 ntBASIC17.08■□□□□ 0.33
CCDC88AQ3V6T2 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC17.08■□□□□ 0.33
CCDC88AQ3V6T2 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC17.08■□□□□ 0.33
CCDC88AQ3V6T2 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC88AQ3V6T2 HLF-202ENST00000430986 1385 ntTSL 2 BASIC17.08■□□□□ 0.33
CCDC88AQ3V6T2 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC17.08■□□□□ 0.33
CCDC88AQ3V6T2 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC88AQ3V6T2 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
CCDC88AQ3V6T2 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC88AQ3V6T2 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC88AQ3V6T2 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC88AQ3V6T2 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC17.08■□□□□ 0.32
CCDC88AQ3V6T2 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC88AQ3V6T2 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC88AQ3V6T2 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CCDC88AQ3V6T2 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC88AQ3V6T2 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC88AQ3V6T2 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CCDC88AQ3V6T2 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 MAGEA7P-201ENST00000436482 942 ntBASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 CRYBB2P1-204ENST00000509460 701 ntTSL 3 BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 OR3A1-202ENST00000615105 966 ntBASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 AL450487.2-201ENST00000615934 407 ntBASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC88AQ3V6T2 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms