Protein–RNA interactions for Protein: Q2NKJ3

CTC1, CST complex subunit CTC1, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1Q2NKJ3 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 AC012073.1-201ENST00000606114 1108 ntBASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC15.3■□□□□ 0.04
CTC1Q2NKJ3 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 CSNK1G2P1-201ENST00000442675 955 ntBASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 AC002044.2-201ENST00000624910 970 ntBASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CTC1Q2NKJ3 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 AC021305.1-201ENST00000520656 1514 ntBASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 ACTBP7-201ENST00000418351 1124 ntBASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 ERP29P1-201ENST00000442902 706 ntBASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 AC018638.5-201ENST00000450885 754 ntBASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 RPL18AP8-201ENST00000486071 528 ntBASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC15.28■□□□□ 0.04
CTC1Q2NKJ3 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms