Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC15.01□□□□□ -0.01
HDAC4P56524 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC15.01□□□□□ -0.01
HDAC4P56524 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC15.01□□□□□ -0.01
HDAC4P56524 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC15.01□□□□□ -0.01
HDAC4P56524 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
HDAC4P56524 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HDAC4P56524 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC15.01□□□□□ -0.01
HDAC4P56524 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC15□□□□□ -0.01
HDAC4P56524 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 CCT8L1P-201ENST00000465400 1674 ntBASIC15□□□□□ -0.01
HDAC4P56524 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC15□□□□□ -0.01
HDAC4P56524 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
HDAC4P56524 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC15□□□□□ -0.01
HDAC4P56524 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
HDAC4P56524 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC15□□□□□ -0.01
HDAC4P56524 CSH2-202ENST00000345366 598 ntTSL 5 BASIC15□□□□□ -0.01
HDAC4P56524 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC15□□□□□ -0.01
HDAC4P56524 AC078875.1-201ENST00000431907 724 ntBASIC15□□□□□ -0.01
HDAC4P56524 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC15□□□□□ -0.01
HDAC4P56524 AC044849.1-201ENST00000519737 1188 ntBASIC15□□□□□ -0.01
HDAC4P56524 CSH2-206ENST00000560142 749 ntTSL 5 BASIC15□□□□□ -0.01
HDAC4P56524 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
HDAC4P56524 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
HDAC4P56524 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC15□□□□□ -0.01
HDAC4P56524 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC15□□□□□ -0.01
HDAC4P56524 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC15□□□□□ -0.01
HDAC4P56524 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC15□□□□□ -0.01
HDAC4P56524 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HDAC4P56524 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC15□□□□□ -0.01
HDAC4P56524 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HDAC4P56524 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
HDAC4P56524 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HDAC4P56524 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
HDAC4P56524 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HDAC4P56524 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HDAC4P56524 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC14.99□□□□□ -0.01
HDAC4P56524 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
HDAC4P56524 AP002353.1-201ENST00000528257 1599 ntBASIC14.99□□□□□ -0.01
HDAC4P56524 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HDAC4P56524 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HDAC4P56524 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HDAC4P56524 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC14.99□□□□□ -0.01
HDAC4P56524 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HDAC4P56524 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HDAC4P56524 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HDAC4P56524 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC14.99□□□□□ -0.01
HDAC4P56524 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC14.99□□□□□ -0.01
HDAC4P56524 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
HDAC4P56524 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC14.99□□□□□ -0.01
HDAC4P56524 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
HDAC4P56524 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.99□□□□□ -0.01
HDAC4P56524 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC14.99□□□□□ -0.01
HDAC4P56524 JTB-202ENST00000356648 1040 ntTSL 2 BASIC14.99□□□□□ -0.01
HDAC4P56524 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC14.99□□□□□ -0.01
HDAC4P56524 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC14.99□□□□□ -0.01
HDAC4P56524 AC092580.1-201ENST00000433998 658 ntBASIC14.99□□□□□ -0.01
HDAC4P56524 NKAIN1P1-201ENST00000435754 582 ntBASIC14.99□□□□□ -0.01
HDAC4P56524 PFN1P12-201ENST00000455938 534 ntBASIC14.99□□□□□ -0.01
HDAC4P56524 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC14.99□□□□□ -0.01
HDAC4P56524 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC14.99□□□□□ -0.01
HDAC4P56524 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC14.99□□□□□ -0.01
HDAC4P56524 AC009779.1-201ENST00000551138 283 ntBASIC14.99□□□□□ -0.01
HDAC4P56524 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC14.99□□□□□ -0.01
HDAC4P56524 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC14.99□□□□□ -0.01
HDAC4P56524 PAM16-211ENST00000575848 518 ntTSL 3 BASIC14.99□□□□□ -0.01
HDAC4P56524 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
HDAC4P56524 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC14.99□□□□□ -0.01
HDAC4P56524 AL591471.1-201ENST00000621855 229 ntBASIC14.99□□□□□ -0.01
HDAC4P56524 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 174.6 ms