Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
COL5A1P20908 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
COL5A1P20908 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL5A1P20908 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
COL5A1P20908 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC13.35□□□□□ -0.27
COL5A1P20908 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC13.35□□□□□ -0.27
COL5A1P20908 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
COL5A1P20908 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL5A1P20908 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL5A1P20908 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC13.35□□□□□ -0.27
COL5A1P20908 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL5A1P20908 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
COL5A1P20908 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL5A1P20908 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC13.35□□□□□ -0.27
COL5A1P20908 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
COL5A1P20908 AL137244.1-201ENST00000422931 865 ntBASIC13.35□□□□□ -0.27
COL5A1P20908 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC13.35□□□□□ -0.27
COL5A1P20908 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC13.35□□□□□ -0.27
COL5A1P20908 AC015818.1-201ENST00000451011 244 ntBASIC13.35□□□□□ -0.27
COL5A1P20908 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC13.35□□□□□ -0.27
COL5A1P20908 PMEL-214ENST00000550447 901 ntTSL 3 BASIC13.35□□□□□ -0.27
COL5A1P20908 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC13.35□□□□□ -0.27
COL5A1P20908 MED11-202ENST00000573708 802 ntTSL 2 BASIC13.35□□□□□ -0.27
COL5A1P20908 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC13.35□□□□□ -0.27
COL5A1P20908 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC13.35□□□□□ -0.27
COL5A1P20908 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC13.35□□□□□ -0.27
COL5A1P20908 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC13.35□□□□□ -0.27
COL5A1P20908 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC13.35□□□□□ -0.27
COL5A1P20908 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL5A1P20908 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL5A1P20908 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC13.35□□□□□ -0.27
COL5A1P20908 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.35□□□□□ -0.27
COL5A1P20908 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC13.35□□□□□ -0.27
COL5A1P20908 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL5A1P20908 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL5A1P20908 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.35□□□□□ -0.27
COL5A1P20908 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL5A1P20908 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL5A1P20908 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC13.35□□□□□ -0.27
COL5A1P20908 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
COL5A1P20908 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC13.35□□□□□ -0.27
COL5A1P20908 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
COL5A1P20908 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC13.35□□□□□ -0.27
COL5A1P20908 AC064850.1-201ENST00000413279 1398 ntBASIC13.35□□□□□ -0.27
COL5A1P20908 LILRP2-202ENST00000413572 1383 ntBASIC13.35□□□□□ -0.27
COL5A1P20908 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC13.35□□□□□ -0.27
COL5A1P20908 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC13.34□□□□□ -0.27
COL5A1P20908 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC13.34□□□□□ -0.27
COL5A1P20908 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
COL5A1P20908 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC13.34□□□□□ -0.27
COL5A1P20908 PHBP10-201ENST00000416467 784 ntBASIC13.34□□□□□ -0.27
COL5A1P20908 AL136084.1-201ENST00000449172 318 ntBASIC13.34□□□□□ -0.27
COL5A1P20908 AC025594.1-201ENST00000469533 543 ntBASIC13.34□□□□□ -0.27
COL5A1P20908 AC093700.1-201ENST00000503348 717 ntBASIC13.34□□□□□ -0.27
COL5A1P20908 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC13.34□□□□□ -0.27
COL5A1P20908 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC13.34□□□□□ -0.27
COL5A1P20908 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC13.34□□□□□ -0.27
COL5A1P20908 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.34□□□□□ -0.27
COL5A1P20908 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC13.34□□□□□ -0.27
COL5A1P20908 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL5A1P20908 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL5A1P20908 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC13.34□□□□□ -0.27
COL5A1P20908 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC13.34□□□□□ -0.27
COL5A1P20908 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL5A1P20908 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL5A1P20908 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL5A1P20908 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL5A1P20908 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
COL5A1P20908 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC13.34□□□□□ -0.27
COL5A1P20908 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL5A1P20908 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL5A1P20908 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC13.34□□□□□ -0.27
COL5A1P20908 RPL18AP16-201ENST00000424057 531 ntBASIC13.34□□□□□ -0.27
COL5A1P20908 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC13.34□□□□□ -0.27
COL5A1P20908 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC13.34□□□□□ -0.27
COL5A1P20908 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC13.34□□□□□ -0.27
COL5A1P20908 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL5A1P20908 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL5A1P20908 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC13.34□□□□□ -0.27
COL5A1P20908 AC006116.2-201ENST00000589958 988 ntBASIC13.34□□□□□ -0.27
COL5A1P20908 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.34□□□□□ -0.27
COL5A1P20908 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL5A1P20908 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
COL5A1P20908 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL5A1P20908 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL5A1P20908 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL5A1P20908 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL5A1P20908 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC13.34□□□□□ -0.27
COL5A1P20908 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
COL5A1P20908 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.34□□□□□ -0.27
COL5A1P20908 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.27
COL5A1P20908 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
COL5A1P20908 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
COL5A1P20908 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
COL5A1P20908 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC13.33□□□□□ -0.27
COL5A1P20908 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC13.33□□□□□ -0.27
COL5A1P20908 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC13.33□□□□□ -0.28
COL5A1P20908 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL5A1P20908 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL5A1P20908 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms