Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC14.08□□□□□ -0.16
PCNAP12004 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.08□□□□□ -0.16
PCNAP12004 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC14.08□□□□□ -0.16
PCNAP12004 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
PCNAP12004 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.08□□□□□ -0.16
PCNAP12004 TP73-211ENST00000604074 4806 ntTSL 5 BASIC14.08□□□□□ -0.16
PCNAP12004 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
PCNAP12004 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC14.08□□□□□ -0.16
PCNAP12004 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC14.08□□□□□ -0.16
PCNAP12004 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
PCNAP12004 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
PCNAP12004 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 HARS-202ENST00000415192 1401 ntTSL 2 BASIC14.07□□□□□ -0.16
PCNAP12004 AC009093.10-201ENST00000641956 1442 ntBASIC14.07□□□□□ -0.16
PCNAP12004 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC14.07□□□□□ -0.16
PCNAP12004 SHC1P1-201ENST00000425230 1745 ntBASIC14.07□□□□□ -0.16
PCNAP12004 HPD-204ENST00000543163 1709 ntTSL 5 BASIC14.07□□□□□ -0.16
PCNAP12004 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
PCNAP12004 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC14.07□□□□□ -0.16
PCNAP12004 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC14.07□□□□□ -0.16
PCNAP12004 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
PCNAP12004 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 MEX3B-202ENST00000558133 4333 ntBASIC14.07□□□□□ -0.16
PCNAP12004 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC14.07□□□□□ -0.16
PCNAP12004 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC14.07□□□□□ -0.16
PCNAP12004 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
PCNAP12004 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.07□□□□□ -0.16
PCNAP12004 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.07□□□□□ -0.16
PCNAP12004 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC14.07□□□□□ -0.16
PCNAP12004 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
PCNAP12004 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.07□□□□□ -0.16
PCNAP12004 U91328.1-201ENST00000437528 223 ntBASIC14.07□□□□□ -0.16
PCNAP12004 CHMP1AP1-201ENST00000445563 662 ntBASIC14.07□□□□□ -0.16
PCNAP12004 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC14.07□□□□□ -0.16
PCNAP12004 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC14.07□□□□□ -0.16
PCNAP12004 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC14.07□□□□□ -0.16
PCNAP12004 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC14.07□□□□□ -0.16
PCNAP12004 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC14.07□□□□□ -0.16
PCNAP12004 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC14.07□□□□□ -0.16
PCNAP12004 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
PCNAP12004 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC14.07□□□□□ -0.16
PCNAP12004 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC14.07□□□□□ -0.16
PCNAP12004 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
PCNAP12004 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
PCNAP12004 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC14.07□□□□□ -0.16
PCNAP12004 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
PCNAP12004 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC14.07□□□□□ -0.16
PCNAP12004 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
PCNAP12004 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
PCNAP12004 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
PCNAP12004 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC14.06□□□□□ -0.16
PCNAP12004 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC14.06□□□□□ -0.16
PCNAP12004 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC14.06□□□□□ -0.16
PCNAP12004 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC14.06□□□□□ -0.16
PCNAP12004 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
PCNAP12004 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PCNAP12004 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
PCNAP12004 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
PCNAP12004 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PCNAP12004 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
PCNAP12004 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PCNAP12004 TCAF1P1-201ENST00000414990 2232 ntBASIC14.06□□□□□ -0.16
PCNAP12004 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC14.06□□□□□ -0.16
PCNAP12004 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PCNAP12004 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
PCNAP12004 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PCNAP12004 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PCNAP12004 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC14.06□□□□□ -0.16
PCNAP12004 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
PCNAP12004 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
PCNAP12004 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
PCNAP12004 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
PCNAP12004 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms