Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX2-2O95096 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC13.2□□□□□ -0.3
NKX2-2O95096 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX2-2O95096 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC13.2□□□□□ -0.3
NKX2-2O95096 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX2-2O95096 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX2-2O95096 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
NKX2-2O95096 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC13.2□□□□□ -0.3
NKX2-2O95096 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
NKX2-2O95096 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX2-2O95096 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX2-2O95096 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX2-2O95096 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX2-2O95096 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC13.2□□□□□ -0.3
NKX2-2O95096 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC13.2□□□□□ -0.3
NKX2-2O95096 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX2-2O95096 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
NKX2-2O95096 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
NKX2-2O95096 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.2□□□□□ -0.3
NKX2-2O95096 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
NKX2-2O95096 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
NKX2-2O95096 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
NKX2-2O95096 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.19□□□□□ -0.3
NKX2-2O95096 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 AC061965.1-201ENST00000560524 1465 ntBASIC13.19□□□□□ -0.3
NKX2-2O95096 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC13.19□□□□□ -0.3
NKX2-2O95096 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC13.19□□□□□ -0.3
NKX2-2O95096 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC13.19□□□□□ -0.3
NKX2-2O95096 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC13.19□□□□□ -0.3
NKX2-2O95096 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC13.19□□□□□ -0.3
NKX2-2O95096 RN7SL277P-201ENST00000481521 288 ntBASIC13.19□□□□□ -0.3
NKX2-2O95096 AC091804.1-201ENST00000486888 567 ntBASIC13.19□□□□□ -0.3
NKX2-2O95096 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
NKX2-2O95096 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC13.19□□□□□ -0.3
NKX2-2O95096 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC13.19□□□□□ -0.3
NKX2-2O95096 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
NKX2-2O95096 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
NKX2-2O95096 AL022334.2-201ENST00000610000 484 ntBASIC13.19□□□□□ -0.3
NKX2-2O95096 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC13.19□□□□□ -0.3
NKX2-2O95096 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
NKX2-2O95096 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
NKX2-2O95096 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC13.19□□□□□ -0.3
NKX2-2O95096 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
NKX2-2O95096 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
NKX2-2O95096 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC13.19□□□□□ -0.3
NKX2-2O95096 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
NKX2-2O95096 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC13.19□□□□□ -0.3
NKX2-2O95096 AC089987.1-201ENST00000551654 2209 ntBASIC13.19□□□□□ -0.3
NKX2-2O95096 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
NKX2-2O95096 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC13.19□□□□□ -0.3
NKX2-2O95096 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX2-2O95096 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC13.18□□□□□ -0.3
NKX2-2O95096 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
NKX2-2O95096 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX2-2O95096 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
NKX2-2O95096 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC13.18□□□□□ -0.3
NKX2-2O95096 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX2-2O95096 BRD7P5-201ENST00000299197 1822 ntBASIC13.18□□□□□ -0.3
NKX2-2O95096 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX2-2O95096 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC13.18□□□□□ -0.3
NKX2-2O95096 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC13.18□□□□□ -0.3
NKX2-2O95096 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
NKX2-2O95096 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC13.18□□□□□ -0.3
NKX2-2O95096 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC13.18□□□□□ -0.3
NKX2-2O95096 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
NKX2-2O95096 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX2-2O95096 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC13.18□□□□□ -0.3
NKX2-2O95096 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX2-2O95096 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX2-2O95096 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
NKX2-2O95096 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX2-2O95096 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC13.18□□□□□ -0.3
NKX2-2O95096 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC13.18□□□□□ -0.3
NKX2-2O95096 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
NKX2-2O95096 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC13.18□□□□□ -0.3
NKX2-2O95096 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC13.18□□□□□ -0.3
NKX2-2O95096 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC13.18□□□□□ -0.3
NKX2-2O95096 OARD1-212ENST00000482515 832 ntTSL 2 BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms