Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
BRCA1P38398 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC16.69■□□□□ 0.26
BRCA1P38398 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.69■□□□□ 0.26
BRCA1P38398 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
BRCA1P38398 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
BRCA1P38398 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
BRCA1P38398 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
BRCA1P38398 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
BRCA1P38398 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
BRCA1P38398 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
BRCA1P38398 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.69■□□□□ 0.26
BRCA1P38398 AC023509.3-202ENST00000591834 1609 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
BRCA1P38398 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
BRCA1P38398 RCC2P1-201ENST00000452257 1476 ntBASIC16.69■□□□□ 0.26
BRCA1P38398 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.69■□□□□ 0.26
BRCA1P38398 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
BRCA1P38398 S100A7A-202ENST00000368728 440 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
BRCA1P38398 C9orf24-202ENST00000379124 648 ntTSL 3 BASIC16.69■□□□□ 0.26
BRCA1P38398 PIGL-202ENST00000395844 1257 ntTSL 5 BASIC16.69■□□□□ 0.26
BRCA1P38398 SERPINB8P1-201ENST00000401898 377 ntBASIC16.69■□□□□ 0.26
BRCA1P38398 RNA5SP407-201ENST00000410275 110 ntBASIC16.69■□□□□ 0.26
BRCA1P38398 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC16.69■□□□□ 0.26
BRCA1P38398 HTATIP2-203ENST00000443524 967 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
BRCA1P38398 RAB6B-205ENST00000486858 880 ntTSL 2 BASIC16.69■□□□□ 0.26
BRCA1P38398 CXXC1P1-202ENST00000489409 1212 ntBASIC16.69■□□□□ 0.26
BRCA1P38398 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC16.69■□□□□ 0.26
BRCA1P38398 SEPT4-AS1-203ENST00000580769 1000 ntTSL 3 BASIC16.69■□□□□ 0.26
BRCA1P38398 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
BRCA1P38398 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
BRCA1P38398 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
BRCA1P38398 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCA1P38398 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCA1P38398 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC16.68■□□□□ 0.26
BRCA1P38398 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
BRCA1P38398 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCA1P38398 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCA1P38398 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
BRCA1P38398 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCA1P38398 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCA1P38398 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
BRCA1P38398 APEX1-201ENST00000216714 1484 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCA1P38398 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
BRCA1P38398 BCKDHA-202ENST00000457836 1745 ntTSL 2 BASIC16.68■□□□□ 0.26
BRCA1P38398 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
BRCA1P38398 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
BRCA1P38398 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
BRCA1P38398 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCA1P38398 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
BRCA1P38398 ECI2-207ENST00000465828 1548 ntTSL 5 BASIC16.68■□□□□ 0.26
BRCA1P38398 LYG2-201ENST00000333017 862 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
BRCA1P38398 TCEAL5-201ENST00000372680 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCA1P38398 KRTAP10-12-201ENST00000400365 873 ntAPPRIS P2 BASIC16.68■□□□□ 0.26
BRCA1P38398 TMEM256P1-201ENST00000430550 340 ntBASIC16.68■□□□□ 0.26
BRCA1P38398 PTPA-219ENST00000435305 530 ntTSL 2 BASIC16.68■□□□□ 0.26
BRCA1P38398 AC006001.2-202ENST00000439360 508 ntTSL 3 BASIC16.68■□□□□ 0.26
BRCA1P38398 TULP3P1-202ENST00000453253 1291 ntBASIC16.68■□□□□ 0.26
BRCA1P38398 AL662899.2-201ENST00000503322 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCA1P38398 AC025576.1-201ENST00000536455 462 ntTSL 5 BASIC16.68■□□□□ 0.26
BRCA1P38398 AL139317.2-201ENST00000556998 158 ntBASIC16.68■□□□□ 0.26
BRCA1P38398 AC114296.1-202ENST00000638019 771 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
BRCA1P38398 STK25-235ENST00000543554 2556 ntTSL 2 BASIC16.68■□□□□ 0.26
BRCA1P38398 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
BRCA1P38398 TUBA3GP-201ENST00000410028 1325 ntBASIC16.68■□□□□ 0.26
BRCA1P38398 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
BRCA1P38398 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCA1P38398 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
BRCA1P38398 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
BRCA1P38398 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.68■□□□□ 0.26
BRCA1P38398 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC16.68■□□□□ 0.26
BRCA1P38398 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.68■□□□□ 0.26
BRCA1P38398 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BRCA1P38398 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
BRCA1P38398 CA6-205ENST00000480186 1493 ntTSL 2 BASIC16.68■□□□□ 0.26
BRCA1P38398 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 CD8B-202ENST00000349455 849 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 MED27-202ENST00000357028 1281 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 ZNF684-201ENST00000372696 1009 ntTSL 3 BASIC16.67■□□□□ 0.26
BRCA1P38398 PLA2G2E-201ENST00000375116 785 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 MARCKSL1P2-201ENST00000401037 976 ntBASIC16.67■□□□□ 0.26
BRCA1P38398 SNORA50D-201ENST00000408059 134 ntBASIC16.67■□□□□ 0.26
BRCA1P38398 ASLP1-201ENST00000428790 637 ntBASIC16.67■□□□□ 0.26
BRCA1P38398 POU5F1-202ENST00000441888 1055 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 PRSS45-201ENST00000442359 687 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 SMCR2-201ENST00000456090 564 ntTSL 2 BASIC16.67■□□□□ 0.26
BRCA1P38398 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC16.67■□□□□ 0.26
BRCA1P38398 AL161668.2-201ENST00000531638 492 ntTSL 5 BASIC16.67■□□□□ 0.26
BRCA1P38398 AC091691.1-201ENST00000583587 1018 ntBASIC16.67■□□□□ 0.26
BRCA1P38398 AC018766.1-201ENST00000601211 484 ntTSL 3 BASIC16.67■□□□□ 0.26
BRCA1P38398 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 DEGS1-202ENST00000391877 1345 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
BRCA1P38398 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
BRCA1P38398 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 PUF60-204ENST00000456095 1736 ntTSL 5 BASIC16.67■□□□□ 0.26
BRCA1P38398 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms