Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 TNN-202ENST00000621086 4234 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 ABCD1P2-201ENST00000429313 1601 ntBASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 BIRC5-201ENST00000301633 2711 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 DDC-214ENST00000622873 1839 ntTSL 3 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CCDC28BQ9BUN5 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 GOLGA8EP-201ENST00000530246 1959 ntBASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 BAIAP2-202ENST00000321300 2879 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 HLA-DRB6-201ENST00000411500 1235 ntBASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 AL391280.1-201ENST00000506969 1062 ntBASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 AC068587.3-201ENST00000526613 355 ntBASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 TMEM261P1-201ENST00000604899 340 ntBASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 ENPP7P14-201ENST00000621765 1040 ntBASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 CELF2-216ENST00000637215 2724 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28BQ9BUN5 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 DYNC1LI1-201ENST00000273130 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 TBC1D3P2-203ENST00000581291 2088 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 SERPINI1-201ENST00000295777 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28BQ9BUN5 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 GAS5-209ENST00000430245 723 ntTSL 3 BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 AL512638.1-201ENST00000457493 794 ntBASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 AC011495.1-201ENST00000498085 584 ntBASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28BQ9BUN5 SMTN-203ENST00000358743 3198 ntAPPRIS P4 TSL 2 BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms