Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLHC1Q8NHS4 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLHC1Q8NHS4 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC13.88□□□□□ -0.19
CLHC1Q8NHS4 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLHC1Q8NHS4 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
CLHC1Q8NHS4 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC13.88□□□□□ -0.19
CLHC1Q8NHS4 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC13.88□□□□□ -0.19
CLHC1Q8NHS4 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLHC1Q8NHS4 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 PTPA-215ENST00000432124 567 ntTSL 4 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 AC007551.1-201ENST00000457394 519 ntBASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 AP005018.1-201ENST00000525475 301 ntBASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 AC027307.3-201ENST00000594262 1100 ntBASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 BTNL10-201ENST00000595971 695 ntBASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 AL136301.1-201ENST00000615830 422 ntBASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 SRP9-204ENST00000619790 377 ntTSL 2 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 IGHV3-72-202ENST00000621503 303 ntBASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 AC027601.3-201ENST00000622907 509 ntBASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLHC1Q8NHS4 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 AL928654.5-201ENST00000624831 2501 ntBASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 GRAP-202ENST00000395635 834 ntTSL 2 BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CLHC1Q8NHS4 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms