Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MRE11P49959 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MRE11P49959 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MRE11P49959 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
MRE11P49959 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MRE11P49959 HERC5-201ENST00000264350 3513 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MRE11P49959 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MRE11P49959 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MRE11P49959 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
MRE11P49959 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
MRE11P49959 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
MRE11P49959 CCT3-204ENST00000368259 1815 ntTSL 2 BASIC16.89■□□□□ 0.29
MRE11P49959 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MRE11P49959 PEG13-201ENST00000631594 5667 ntBASIC16.88■□□□□ 0.29
MRE11P49959 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC16.88■□□□□ 0.29
MRE11P49959 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MRE11P49959 HPX-201ENST00000265983 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MRE11P49959 AL355102.3-201ENST00000554299 1678 ntBASIC16.88■□□□□ 0.29
MRE11P49959 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
MRE11P49959 DSN1-201ENST00000373734 1915 ntTSL 2 BASIC16.88■□□□□ 0.29
MRE11P49959 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MRE11P49959 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
MRE11P49959 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC16.88■□□□□ 0.29
MRE11P49959 KDM2B-215ENST00000542973 3170 ntTSL 2 BASIC16.88■□□□□ 0.29
MRE11P49959 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
MRE11P49959 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
MRE11P49959 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
MRE11P49959 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
MRE11P49959 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC16.88■□□□□ 0.29
MRE11P49959 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MRE11P49959 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
MRE11P49959 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MRE11P49959 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
MRE11P49959 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.88■□□□□ 0.29
MRE11P49959 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MRE11P49959 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
MRE11P49959 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MRE11P49959 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MRE11P49959 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC16.88■□□□□ 0.29
MRE11P49959 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC16.88■□□□□ 0.29
MRE11P49959 HIST3H2BA-201ENST00000436555 524 ntBASIC16.88■□□□□ 0.29
MRE11P49959 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MRE11P49959 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.88■□□□□ 0.29
MRE11P49959 SLED1-202ENST00000512051 380 ntBASIC16.88■□□□□ 0.29
MRE11P49959 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC16.88■□□□□ 0.29
MRE11P49959 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.88■□□□□ 0.29
MRE11P49959 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC16.88■□□□□ 0.29
MRE11P49959 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MRE11P49959 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MRE11P49959 AC007431.3-201ENST00000623221 587 ntBASIC16.88■□□□□ 0.29
MRE11P49959 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MRE11P49959 TUBB1P2-201ENST00000422712 1306 ntBASIC16.88■□□□□ 0.29
MRE11P49959 TUBB1P1-201ENST00000503144 1300 ntBASIC16.88■□□□□ 0.29
MRE11P49959 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
MRE11P49959 LHCGR-201ENST00000294954 3044 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
MRE11P49959 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
MRE11P49959 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
MRE11P49959 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MRE11P49959 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC16.87■□□□□ 0.29
MRE11P49959 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
MRE11P49959 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MRE11P49959 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MRE11P49959 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MRE11P49959 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MRE11P49959 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MRE11P49959 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
MRE11P49959 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
MRE11P49959 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
MRE11P49959 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
MRE11P49959 HLA-H-201ENST00000383620 1096 ntBASIC16.87■□□□□ 0.29
MRE11P49959 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
MRE11P49959 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.87■□□□□ 0.29
MRE11P49959 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC16.87■□□□□ 0.29
MRE11P49959 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.87■□□□□ 0.29
MRE11P49959 CROCCP4-201ENST00000457096 498 ntBASIC16.87■□□□□ 0.29
MRE11P49959 AC108725.1-201ENST00000495472 409 ntBASIC16.87■□□□□ 0.29
MRE11P49959 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.87■□□□□ 0.29
MRE11P49959 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
MRE11P49959 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.87■□□□□ 0.29
MRE11P49959 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.87■□□□□ 0.29
MRE11P49959 ZBTB49-201ENST00000337872 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MRE11P49959 SFRP1-202ENST00000379845 3873 ntTSL 2 BASIC16.87■□□□□ 0.29
MRE11P49959 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
MRE11P49959 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
MRE11P49959 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.87■□□□□ 0.29
MRE11P49959 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC16.87■□□□□ 0.29
MRE11P49959 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
MRE11P49959 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MRE11P49959 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
MRE11P49959 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
MRE11P49959 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MRE11P49959 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MRE11P49959 TRPM5-202ENST00000528453 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
MRE11P49959 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC16.87■□□□□ 0.29
MRE11P49959 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.87■□□□□ 0.29
MRE11P49959 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
MRE11P49959 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
MRE11P49959 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
MRE11P49959 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MRE11P49959 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms