Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
PTPN9P43378 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
PTPN9P43378 AL022334.2-201ENST00000610000 484 ntBASIC14.9□□□□□ -0.02
PTPN9P43378 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC14.9□□□□□ -0.02
PTPN9P43378 AL122018.1-201ENST00000446607 2310 ntBASIC14.9□□□□□ -0.02
PTPN9P43378 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.9□□□□□ -0.02
PTPN9P43378 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC14.9□□□□□ -0.02
PTPN9P43378 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.9□□□□□ -0.02
PTPN9P43378 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
PTPN9P43378 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
PTPN9P43378 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
PTPN9P43378 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC14.89□□□□□ -0.03
PTPN9P43378 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
PTPN9P43378 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN9P43378 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC14.89□□□□□ -0.03
PTPN9P43378 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN9P43378 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN9P43378 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC14.89□□□□□ -0.03
PTPN9P43378 LINC01165-201ENST00000445190 1623 ntBASIC14.89□□□□□ -0.03
PTPN9P43378 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN9P43378 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC14.89□□□□□ -0.03
PTPN9P43378 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN9P43378 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC14.89□□□□□ -0.03
PTPN9P43378 AGER-203ENST00000375065 665 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN9P43378 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
PTPN9P43378 CRCP-204ENST00000398684 492 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN9P43378 SLC16A6P1-201ENST00000413214 1059 ntBASIC14.89□□□□□ -0.03
PTPN9P43378 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC14.89□□□□□ -0.03
PTPN9P43378 EIF4HP1-201ENST00000453115 687 ntBASIC14.89□□□□□ -0.03
PTPN9P43378 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC14.89□□□□□ -0.03
PTPN9P43378 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN9P43378 ZNF767P-206ENST00000513792 565 ntBASIC14.89□□□□□ -0.03
PTPN9P43378 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC14.89□□□□□ -0.03
PTPN9P43378 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN9P43378 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN9P43378 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC14.89□□□□□ -0.03
PTPN9P43378 KRT18P8-201ENST00000581937 1246 ntBASIC14.89□□□□□ -0.03
PTPN9P43378 NAT9-222ENST00000583476 583 ntTSL 3 BASIC14.89□□□□□ -0.03
PTPN9P43378 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 AC243960.2-201ENST00000600996 747 ntBASIC14.89□□□□□ -0.03
PTPN9P43378 AL805961.1-203ENST00000641078 1258 ntBASIC14.89□□□□□ -0.03
PTPN9P43378 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
PTPN9P43378 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.89□□□□□ -0.03
PTPN9P43378 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC14.89□□□□□ -0.03
PTPN9P43378 STK26-204ENST00000481105 1835 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN9P43378 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
PTPN9P43378 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC14.89□□□□□ -0.03
PTPN9P43378 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC14.89□□□□□ -0.03
PTPN9P43378 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PTPN9P43378 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN9P43378 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN9P43378 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN9P43378 AMT-256ENST00000638063 1783 ntTSL 5 BASIC14.88□□□□□ -0.03
PTPN9P43378 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN9P43378 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.88□□□□□ -0.03
PTPN9P43378 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN9P43378 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN9P43378 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC14.88□□□□□ -0.03
PTPN9P43378 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
PTPN9P43378 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN9P43378 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN9P43378 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.88□□□□□ -0.03
PTPN9P43378 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN9P43378 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN9P43378 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
PTPN9P43378 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PTPN9P43378 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
PTPN9P43378 HNRNPA1P41-201ENST00000397777 928 ntBASIC14.88□□□□□ -0.03
PTPN9P43378 LBH-202ENST00000401506 485 ntTSL 3 BASIC14.88□□□□□ -0.03
PTPN9P43378 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC14.88□□□□□ -0.03
PTPN9P43378 AC007274.1-201ENST00000439805 662 ntBASIC14.88□□□□□ -0.03
PTPN9P43378 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms