Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 ZNRD1-204ENST00000376785 754 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 RPL18AP15-201ENST00000430258 517 ntBASIC13.77□□□□□ -0.21
VPS13AQ96RL7 AC093700.1-201ENST00000503348 717 ntBASIC13.77□□□□□ -0.21
VPS13AQ96RL7 AC100858.1-201ENST00000514059 1228 ntBASIC13.77□□□□□ -0.21
VPS13AQ96RL7 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 TTC39A-AS1-201ENST00000564479 812 ntTSL 3 BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 AC009812.1-201ENST00000605948 1059 ntBASIC13.77□□□□□ -0.21
VPS13AQ96RL7 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
VPS13AQ96RL7 PLEKHG6-202ENST00000304581 1424 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 OSCP1-201ENST00000235532 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 OSCP1-203ENST00000356637 1463 ntTSL 5 BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 HSD3BP1-201ENST00000286193 1111 ntBASIC13.76□□□□□ -0.21
VPS13AQ96RL7 OR51B5-201ENST00000300773 939 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 IQCF4-203ENST00000428561 420 ntBASIC13.76□□□□□ -0.21
VPS13AQ96RL7 AC010319.4-201ENST00000593957 691 ntTSL 3 BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 AL049840.2-201ENST00000602722 535 ntBASIC13.76□□□□□ -0.21
VPS13AQ96RL7 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 CHCHD7-218ENST00000523975 1805 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 LINC00115-201ENST00000473798 1317 ntBASIC13.76□□□□□ -0.21
VPS13AQ96RL7 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 FP671120.1-201ENST00000623664 2498 ntTSL 2 BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 FP236383.1-201ENST00000623860 2498 ntTSL 2 BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 U3.5-201ENST00000363448 216 ntBASIC13.76□□□□□ -0.21
VPS13AQ96RL7 AC131235.2-201ENST00000445553 1057 ntBASIC13.76□□□□□ -0.21
VPS13AQ96RL7 VDAC1P11-201ENST00000458323 852 ntBASIC13.76□□□□□ -0.21
VPS13AQ96RL7 AF186996.6-201ENST00000485294 149 ntBASIC13.76□□□□□ -0.21
VPS13AQ96RL7 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
VPS13AQ96RL7 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 UCP2-202ENST00000536983 1413 ntTSL 5 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 LINC02449-201ENST00000304751 795 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 AC004923.1-201ENST00000527543 776 ntTSL 5 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 MAFG-AS1-202ENST00000583492 969 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 AC018695.2-201ENST00000602789 498 ntTSL 5 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 AC007950.2-201ENST00000615045 2347 ntBASIC13.75□□□□□ -0.21
VPS13AQ96RL7 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 ZNF384-204ENST00000396801 3008 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 ARR3-201ENST00000307959 1292 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 RFNG-202ENST00000429557 994 ntTSL 5 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 AC007728.1-202ENST00000564510 787 ntTSL 3 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 MSRB1-205ENST00000564908 550 ntTSL 3 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 CLDN6-203ENST00000572154 461 ntTSL 3 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 AC005921.2-201ENST00000574246 670 ntTSL 5 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 AC105917.1-201ENST00000506637 2539 ntBASIC13.75□□□□□ -0.21
VPS13AQ96RL7 SFPQP1-201ENST00000446621 1786 ntBASIC13.75□□□□□ -0.21
VPS13AQ96RL7 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 MIR632-201ENST00000385193 94 ntBASIC13.75□□□□□ -0.21
VPS13AQ96RL7 AC004771.1-201ENST00000438266 583 ntTSL 2 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 DSCAS-201ENST00000581836 553 ntTSL 4 BASIC13.75□□□□□ -0.21
VPS13AQ96RL7 RN7SL202P-201ENST00000584410 262 ntBASIC13.75□□□□□ -0.21
VPS13AQ96RL7 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms