Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 USP44-202ENST00000393091 3161 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 FUNDC1-201ENST00000378045 1196 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 CD3G-202ENST00000392883 1179 ntTSL 5 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 HNRNPA3P12-201ENST00000437410 1063 ntBASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 AC007679.1-201ENST00000458609 502 ntBASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 CDC37P2-201ENST00000562287 1029 ntBASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 AL591806.3-201ENST00000289779 2096 ntAPPRIS P5 TSL 2 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 MIR632-201ENST00000385193 94 ntBASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 GLT8D2-204ENST00000547583 862 ntTSL 5 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 BOLA3P2-201ENST00000586496 323 ntBASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 AL137028.2-201ENST00000614601 256 ntBASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 BAP1-211ENST00000615113 489 ntBASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 AC011477.7-201ENST00000617163 1440 ntBASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 SNORD23-201ENST00000408876 110 ntBASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 AL359092.2-201ENST00000423330 585 ntBASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 AP005273.1-201ENST00000444862 522 ntTSL 3 BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 RN7SL789P-201ENST00000478944 293 ntBASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 PHBP18-201ENST00000546648 813 ntBASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC9.26□□□□□ -0.93
VPS13DQ5THJ4 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 MYB-201ENST00000316528 3571 ntTSL 5 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 PLA2G6-210ENST00000435484 612 ntTSL 4 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 RN7SL351P-201ENST00000469306 248 ntBASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 SAA2-206ENST00000530400 323 ntTSL 3 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 AC048380.1-201ENST00000589818 465 ntTSL 3 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 BTF3-202ENST00000380591 1237 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 RBMX2P5-201ENST00000424312 969 ntBASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 NAA38-204ENST00000575208 529 ntTSL 3 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 HIST2H2BE-201ENST00000369155 2194 ntAPPRIS P1 BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 EEF1G-201ENST00000329251 1523 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
VPS13DQ5THJ4 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC9.25□□□□□ -0.93
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms