Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
CLRN1P58418 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC12.92□□□□□ -0.34
CLRN1P58418 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC12.92□□□□□ -0.34
CLRN1P58418 AC244394.1-201ENST00000435000 1665 ntBASIC12.92□□□□□ -0.34
CLRN1P58418 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC12.92□□□□□ -0.34
CLRN1P58418 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC12.92□□□□□ -0.34
CLRN1P58418 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
CLRN1P58418 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 FANCC-201ENST00000289081 4585 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
CLRN1P58418 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC12.91□□□□□ -0.34
CLRN1P58418 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
CLRN1P58418 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 AL008718.2-201ENST00000609206 1313 ntBASIC12.91□□□□□ -0.34
CLRN1P58418 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC12.91□□□□□ -0.34
CLRN1P58418 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC12.91□□□□□ -0.34
CLRN1P58418 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
CLRN1P58418 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
CLRN1P58418 MIR658-201ENST00000385210 100 ntBASIC12.91□□□□□ -0.34
CLRN1P58418 AC022210.1-201ENST00000449856 793 ntBASIC12.91□□□□□ -0.34
CLRN1P58418 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC12.91□□□□□ -0.34
CLRN1P58418 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC12.91□□□□□ -0.34
CLRN1P58418 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC12.91□□□□□ -0.34
CLRN1P58418 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC12.91□□□□□ -0.34
CLRN1P58418 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC12.91□□□□□ -0.34
CLRN1P58418 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC12.91□□□□□ -0.34
CLRN1P58418 CYGB-203ENST00000589145 788 ntTSL 3 BASIC12.91□□□□□ -0.34
CLRN1P58418 AC009955.4-201ENST00000597192 544 ntBASIC12.91□□□□□ -0.34
CLRN1P58418 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC12.91□□□□□ -0.34
CLRN1P58418 COX11-210ENST00000639671 696 ntBASIC12.91□□□□□ -0.34
CLRN1P58418 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC12.91□□□□□ -0.34
CLRN1P58418 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC12.91□□□□□ -0.34
CLRN1P58418 MYO15B-236ENST00000633867 6323 ntTSL 5 BASIC12.91□□□□□ -0.34
CLRN1P58418 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC12.91□□□□□ -0.34
CLRN1P58418 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
CLRN1P58418 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
CLRN1P58418 TMBIM7P-202ENST00000641474 1516 ntBASIC12.91□□□□□ -0.34
CLRN1P58418 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC12.91□□□□□ -0.34
CLRN1P58418 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 TLK1-202ENST00000360843 5726 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
CLRN1P58418 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC12.91□□□□□ -0.34
CLRN1P58418 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC12.91□□□□□ -0.34
CLRN1P58418 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
CLRN1P58418 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC12.91□□□□□ -0.34
CLRN1P58418 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CLRN1P58418 AC041040.2-201ENST00000622926 2899 ntBASIC12.91□□□□□ -0.34
CLRN1P58418 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 ENTPD4-202ENST00000358689 5861 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 KRT8P24-201ENST00000560290 1559 ntBASIC12.9□□□□□ -0.34
CLRN1P58418 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
CLRN1P58418 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC12.9□□□□□ -0.34
CLRN1P58418 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC12.9□□□□□ -0.34
CLRN1P58418 BEND3P1-201ENST00000421591 1944 ntBASIC12.9□□□□□ -0.34
CLRN1P58418 AMT-239ENST00000636865 1914 ntTSL 5 BASIC12.9□□□□□ -0.34
CLRN1P58418 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
CLRN1P58418 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
CLRN1P58418 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms