Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP2AO43633 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP2AO43633 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP2AO43633 PDIA3P2-201ENST00000428073 158 ntBASIC16.19■□□□□ 0.18
CHMP2AO43633 IMP3P2-201ENST00000489760 475 ntBASIC16.19■□□□□ 0.18
CHMP2AO43633 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC16.19■□□□□ 0.18
CHMP2AO43633 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC16.19■□□□□ 0.18
CHMP2AO43633 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC16.19■□□□□ 0.18
CHMP2AO43633 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP2AO43633 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP2AO43633 CHMP4BP1-201ENST00000556017 588 ntBASIC16.19■□□□□ 0.18
CHMP2AO43633 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC16.19■□□□□ 0.18
CHMP2AO43633 AC020922.3-201ENST00000595064 547 ntBASIC16.19■□□□□ 0.18
CHMP2AO43633 AF254983.2-201ENST00000612331 135 ntBASIC16.19■□□□□ 0.18
CHMP2AO43633 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC16.19■□□□□ 0.18
CHMP2AO43633 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC16.19■□□□□ 0.18
CHMP2AO43633 PPA1-206ENST00000625364 644 ntTSL 5 BASIC16.19■□□□□ 0.18
CHMP2AO43633 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC16.19■□□□□ 0.18
CHMP2AO43633 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP2AO43633 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC16.19■□□□□ 0.18
CHMP2AO43633 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP2AO43633 CICP16-201ENST00000502609 2813 ntBASIC16.19■□□□□ 0.18
CHMP2AO43633 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP2AO43633 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP2AO43633 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CHMP2AO43633 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP2AO43633 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CHMP2AO43633 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP2AO43633 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CHMP2AO43633 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP2AO43633 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP2AO43633 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CHMP2AO43633 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP2AO43633 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP2AO43633 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP2AO43633 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP2AO43633 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHMP2AO43633 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CHMP2AO43633 LINC02486-201ENST00000604157 3000 ntBASIC16.19■□□□□ 0.18
CHMP2AO43633 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP2AO43633 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC16.18■□□□□ 0.18
CHMP2AO43633 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC16.18■□□□□ 0.18
CHMP2AO43633 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CHMP2AO43633 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC16.18■□□□□ 0.18
CHMP2AO43633 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC16.18■□□□□ 0.18
CHMP2AO43633 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC16.18■□□□□ 0.18
CHMP2AO43633 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP2AO43633 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP2AO43633 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP2AO43633 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC16.18■□□□□ 0.18
CHMP2AO43633 AL022313.4-201ENST00000562756 2046 ntBASIC16.18■□□□□ 0.18
CHMP2AO43633 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP2AO43633 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP2AO43633 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP2AO43633 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC16.18■□□□□ 0.18
CHMP2AO43633 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP2AO43633 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CHMP2AO43633 JTB-202ENST00000356648 1040 ntTSL 2 BASIC16.18■□□□□ 0.18
CHMP2AO43633 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC16.18■□□□□ 0.18
CHMP2AO43633 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC16.18■□□□□ 0.18
CHMP2AO43633 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC16.18■□□□□ 0.18
CHMP2AO43633 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC16.18■□□□□ 0.18
CHMP2AO43633 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC16.18■□□□□ 0.18
CHMP2AO43633 AC116345.2-201ENST00000512837 523 ntBASIC16.18■□□□□ 0.18
CHMP2AO43633 MIR3188-201ENST00000583494 85 ntBASIC16.18■□□□□ 0.18
CHMP2AO43633 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC16.18■□□□□ 0.18
CHMP2AO43633 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP2AO43633 AL109837.1-201ENST00000603272 613 ntBASIC16.18■□□□□ 0.18
CHMP2AO43633 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC16.18■□□□□ 0.18
CHMP2AO43633 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP2AO43633 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP2AO43633 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
CHMP2AO43633 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP2AO43633 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP2AO43633 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP2AO43633 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP2AO43633 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP2AO43633 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP2AO43633 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP2AO43633 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP2AO43633 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CHMP2AO43633 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CHMP2AO43633 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHMP2AO43633 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC16.17■□□□□ 0.18
CHMP2AO43633 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHMP2AO43633 SNX18-202ENST00000343017 3140 ntBASIC16.17■□□□□ 0.18
CHMP2AO43633 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC16.17■□□□□ 0.18
CHMP2AO43633 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CHMP2AO43633 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC16.17■□□□□ 0.18
CHMP2AO43633 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC16.17■□□□□ 0.18
CHMP2AO43633 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CHMP2AO43633 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
CHMP2AO43633 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CHMP2AO43633 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC16.17■□□□□ 0.18
CHMP2AO43633 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHMP2AO43633 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CHMP2AO43633 LBH-202ENST00000401506 485 ntTSL 3 BASIC16.17■□□□□ 0.18
CHMP2AO43633 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CHMP2AO43633 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC16.17■□□□□ 0.18
CHMP2AO43633 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms