Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC13.85□□□□□ -0.19
VSX2P58304 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.85□□□□□ -0.19
VSX2P58304 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
VSX2P58304 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.85□□□□□ -0.19
VSX2P58304 RN7SL832P-201ENST00000607781 1756 ntBASIC13.85□□□□□ -0.19
VSX2P58304 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VSX2P58304 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC13.85□□□□□ -0.19
VSX2P58304 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC13.85□□□□□ -0.19
VSX2P58304 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.85□□□□□ -0.19
VSX2P58304 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC13.85□□□□□ -0.19
VSX2P58304 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VSX2P58304 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.85□□□□□ -0.19
VSX2P58304 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.85□□□□□ -0.19
VSX2P58304 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.85□□□□□ -0.19
VSX2P58304 AHCYP4-201ENST00000419201 1315 ntBASIC13.85□□□□□ -0.19
VSX2P58304 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
VSX2P58304 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC13.85□□□□□ -0.19
VSX2P58304 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VSX2P58304 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC13.84□□□□□ -0.19
VSX2P58304 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC13.84□□□□□ -0.19
VSX2P58304 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
VSX2P58304 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.84□□□□□ -0.19
VSX2P58304 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
VSX2P58304 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
VSX2P58304 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
VSX2P58304 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC13.84□□□□□ -0.19
VSX2P58304 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
VSX2P58304 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 ACTG1P2-201ENST00000415776 1125 ntBASIC13.84□□□□□ -0.19
VSX2P58304 KRTAP19-9P-201ENST00000421795 191 ntBASIC13.84□□□□□ -0.19
VSX2P58304 ACTG1P11-201ENST00000425411 1125 ntBASIC13.84□□□□□ -0.19
VSX2P58304 XBP1P1-201ENST00000436573 652 ntBASIC13.84□□□□□ -0.19
VSX2P58304 ST13P19-201ENST00000442505 1124 ntBASIC13.84□□□□□ -0.19
VSX2P58304 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC13.84□□□□□ -0.19
VSX2P58304 Z97180.1-201ENST00000445173 988 ntBASIC13.84□□□□□ -0.19
VSX2P58304 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 PGAM1P5-201ENST00000548011 764 ntBASIC13.84□□□□□ -0.19
VSX2P58304 AC003686.1-201ENST00000550956 1034 ntBASIC13.84□□□□□ -0.19
VSX2P58304 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC13.84□□□□□ -0.19
VSX2P58304 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC13.84□□□□□ -0.19
VSX2P58304 PAM16-211ENST00000575848 518 ntTSL 3 BASIC13.84□□□□□ -0.19
VSX2P58304 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
VSX2P58304 KLK3-207ENST00000595952 969 ntTSL 3 BASIC13.84□□□□□ -0.19
VSX2P58304 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC13.84□□□□□ -0.19
VSX2P58304 AL157813.1-201ENST00000612996 587 ntBASIC13.84□□□□□ -0.19
VSX2P58304 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.84□□□□□ -0.19
VSX2P58304 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.84□□□□□ -0.19
VSX2P58304 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC13.84□□□□□ -0.19
VSX2P58304 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.84□□□□□ -0.19
VSX2P58304 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
VSX2P58304 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VSX2P58304 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC13.83□□□□□ -0.19
VSX2P58304 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.19
VSX2P58304 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC13.83□□□□□ -0.19
VSX2P58304 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.83□□□□□ -0.19
VSX2P58304 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.19
VSX2P58304 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.19
VSX2P58304 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
VSX2P58304 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC13.83□□□□□ -0.19
VSX2P58304 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
VSX2P58304 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
VSX2P58304 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.83□□□□□ -0.2
VSX2P58304 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VSX2P58304 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VSX2P58304 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC13.83□□□□□ -0.2
VSX2P58304 AC015802.1-201ENST00000588104 1449 ntBASIC13.83□□□□□ -0.2
VSX2P58304 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VSX2P58304 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VSX2P58304 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VSX2P58304 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC13.83□□□□□ -0.2
VSX2P58304 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
VSX2P58304 KRT8P21-201ENST00000430398 1491 ntBASIC13.83□□□□□ -0.2
VSX2P58304 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC13.83□□□□□ -0.2
VSX2P58304 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VSX2P58304 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC13.83□□□□□ -0.2
VSX2P58304 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VSX2P58304 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms