Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 RPS23-205ENST00000510019 1019 ntTSL 4 BASIC18.26■□□□□ 0.51
RXRBP28702 AC027277.1-201ENST00000535363 533 ntTSL 3 BASIC18.26■□□□□ 0.51
RXRBP28702 Z92544.2-202ENST00000566927 407 ntTSL 3 BASIC18.26■□□□□ 0.51
RXRBP28702 IGHV1OR16-3-201ENST00000568138 205 ntBASIC18.26■□□□□ 0.51
RXRBP28702 AC136475.1-203ENST00000602756 1034 ntTSL 3 BASIC18.26■□□□□ 0.51
RXRBP28702 AC026120.2-201ENST00000617239 309 ntBASIC18.26■□□□□ 0.51
RXRBP28702 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RXRBP28702 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.26■□□□□ 0.51
RXRBP28702 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
RXRBP28702 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
RXRBP28702 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
RXRBP28702 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RXRBP28702 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RXRBP28702 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
RXRBP28702 WRB-202ENST00000380708 1464 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RXRBP28702 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.26■□□□□ 0.51
RXRBP28702 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
RXRBP28702 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
RXRBP28702 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RXRBP28702 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC18.25■□□□□ 0.51
RXRBP28702 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
RXRBP28702 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RXRBP28702 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
RXRBP28702 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
RXRBP28702 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
RXRBP28702 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
RXRBP28702 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
RXRBP28702 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RXRBP28702 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
RXRBP28702 TPM3P7-201ENST00000338274 732 ntBASIC18.25■□□□□ 0.51
RXRBP28702 MGST3-204ENST00000367888 778 ntTSL 3 BASIC18.25■□□□□ 0.51
RXRBP28702 APOO-201ENST00000379226 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RXRBP28702 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RXRBP28702 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RXRBP28702 AL161644.1-201ENST00000426901 1111 ntTSL 2 BASIC18.25■□□□□ 0.51
RXRBP28702 AC004112.1-201ENST00000431064 561 ntTSL 3 BASIC18.25■□□□□ 0.51
RXRBP28702 AC079250.1-201ENST00000456046 531 ntBASIC18.25■□□□□ 0.51
RXRBP28702 PRDX2P3-201ENST00000515779 586 ntBASIC18.25■□□□□ 0.51
RXRBP28702 AC009646.2-202ENST00000524425 826 ntTSL 3 BASIC18.25■□□□□ 0.51
RXRBP28702 AP001979.1-201ENST00000529222 751 ntBASIC18.25■□□□□ 0.51
RXRBP28702 AL133551.1-201ENST00000610279 1222 ntBASIC18.25■□□□□ 0.51
RXRBP28702 HIST1H3E-201ENST00000614911 462 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
RXRBP28702 TMEM230-211ENST00000615008 594 ntTSL 4 BASIC18.25■□□□□ 0.51
RXRBP28702 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
RXRBP28702 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
RXRBP28702 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RXRBP28702 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RXRBP28702 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
RXRBP28702 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
RXRBP28702 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RXRBP28702 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RXRBP28702 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RXRBP28702 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RXRBP28702 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
RXRBP28702 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RXRBP28702 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC18.25■□□□□ 0.51
RXRBP28702 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC18.24■□□□□ 0.51
RXRBP28702 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC18.24■□□□□ 0.51
RXRBP28702 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RXRBP28702 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
RXRBP28702 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC18.24■□□□□ 0.51
RXRBP28702 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RXRBP28702 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RXRBP28702 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RXRBP28702 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RXRBP28702 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.24■□□□□ 0.51
RXRBP28702 TPM3-204ENST00000323144 1088 ntTSL 2 BASIC18.24■□□□□ 0.51
RXRBP28702 SUGT1-202ENST00000343788 1217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
RXRBP28702 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RXRBP28702 AC090587.1-201ENST00000415809 494 ntTSL 3 BASIC18.24■□□□□ 0.51
RXRBP28702 CLK2P1-201ENST00000416636 1294 ntBASIC18.24■□□□□ 0.51
RXRBP28702 GAPDHP65-201ENST00000425487 1006 ntBASIC18.24■□□□□ 0.51
RXRBP28702 AC105443.1-201ENST00000433754 712 ntBASIC18.24■□□□□ 0.51
RXRBP28702 HTATIP2-203ENST00000443524 967 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
RXRBP28702 CST7-201ENST00000480798 930 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RXRBP28702 EFNA5-204ENST00000509503 637 ntTSL 5 BASIC18.24■□□□□ 0.51
RXRBP28702 AC022447.2-201ENST00000509750 543 ntTSL 3 BASIC18.24■□□□□ 0.51
RXRBP28702 SLC25A3-212ENST00000549338 1285 ntAPPRIS ALT1 TSL 3 BASIC18.24■□□□□ 0.51
RXRBP28702 HNRNPA1P11-201ENST00000580106 956 ntBASIC18.24■□□□□ 0.51
RXRBP28702 AC015818.3-201ENST00000583797 589 ntBASIC18.24■□□□□ 0.51
RXRBP28702 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
RXRBP28702 IGHD-202ENST00000613640 1155 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
RXRBP28702 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC18.24■□□□□ 0.51
RXRBP28702 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC18.24■□□□□ 0.51
RXRBP28702 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.24■□□□□ 0.51
RXRBP28702 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RXRBP28702 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RXRBP28702 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.24■□□□□ 0.51
RXRBP28702 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
RXRBP28702 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RXRBP28702 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
RXRBP28702 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC18.24■□□□□ 0.51
RXRBP28702 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RXRBP28702 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RXRBP28702 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RXRBP28702 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RXRBP28702 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
RXRBP28702 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RXRBP28702 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RXRBP28702 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms