Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
RIPK2O43353 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC14.66□□□□□ -0.06
RIPK2O43353 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
RIPK2O43353 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
RIPK2O43353 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
RIPK2O43353 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
RIPK2O43353 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.66□□□□□ -0.06
RIPK2O43353 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 GAS5-209ENST00000430245 723 ntTSL 3 BASIC14.66□□□□□ -0.06
RIPK2O43353 AC093433.1-201ENST00000458048 571 ntBASIC14.66□□□□□ -0.06
RIPK2O43353 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.66□□□□□ -0.06
RIPK2O43353 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.66□□□□□ -0.06
RIPK2O43353 AC123567.1-201ENST00000548294 1261 ntBASIC14.66□□□□□ -0.06
RIPK2O43353 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.66□□□□□ -0.06
RIPK2O43353 TMEM261P1-201ENST00000604899 340 ntBASIC14.66□□□□□ -0.06
RIPK2O43353 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC14.66□□□□□ -0.06
RIPK2O43353 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC14.66□□□□□ -0.06
RIPK2O43353 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
RIPK2O43353 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC14.66□□□□□ -0.06
RIPK2O43353 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC14.66□□□□□ -0.06
RIPK2O43353 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
RIPK2O43353 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC14.66□□□□□ -0.06
RIPK2O43353 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC14.66□□□□□ -0.06
RIPK2O43353 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 PHB-210ENST00000511832 1509 ntTSL 2 BASIC14.66□□□□□ -0.06
RIPK2O43353 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.66□□□□□ -0.06
RIPK2O43353 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC14.66□□□□□ -0.06
RIPK2O43353 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RIPK2O43353 AC004899.2-201ENST00000622993 3860 ntBASIC14.66□□□□□ -0.06
RIPK2O43353 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RIPK2O43353 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RIPK2O43353 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC14.65□□□□□ -0.06
RIPK2O43353 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RIPK2O43353 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC14.65□□□□□ -0.06
RIPK2O43353 MTMR11-201ENST00000369140 2324 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
RIPK2O43353 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
RIPK2O43353 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RIPK2O43353 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
RIPK2O43353 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
RIPK2O43353 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC14.65□□□□□ -0.06
RIPK2O43353 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RIPK2O43353 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
RIPK2O43353 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
RIPK2O43353 ITPRIPL1-204ENST00000439118 1946 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RIPK2O43353 RHPN1-AS1-201ENST00000518049 1918 ntBASIC14.65□□□□□ -0.06
RIPK2O43353 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC14.65□□□□□ -0.06
RIPK2O43353 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
RIPK2O43353 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RIPK2O43353 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
RIPK2O43353 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
RIPK2O43353 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.65□□□□□ -0.06
RIPK2O43353 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
RIPK2O43353 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RIPK2O43353 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RIPK2O43353 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RIPK2O43353 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RIPK2O43353 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.65□□□□□ -0.06
RIPK2O43353 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.65□□□□□ -0.06
RIPK2O43353 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RIPK2O43353 INE1-201ENST00000456273 945 ntBASIC14.65□□□□□ -0.06
RIPK2O43353 IGHVIII-5-2-201ENST00000522505 261 ntBASIC14.65□□□□□ -0.06
RIPK2O43353 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.65□□□□□ -0.06
RIPK2O43353 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
RIPK2O43353 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RIPK2O43353 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14.65□□□□□ -0.06
RIPK2O43353 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
RIPK2O43353 AL031595.1-201ENST00000623969 4709 ntBASIC14.65□□□□□ -0.06
RIPK2O43353 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RIPK2O43353 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RIPK2O43353 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RIPK2O43353 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
RIPK2O43353 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC14.65□□□□□ -0.06
RIPK2O43353 CYP2J2-201ENST00000371204 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RIPK2O43353 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
RIPK2O43353 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms