Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SCARNA20.5-201ENST00000516991 142 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 ARHGEF2-206ENST00000462460 4438 ntTSL 5 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 HLA-DQB2-231ENST00000435145 2026 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 JAK3-204ENST00000527670 3996 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 FLCN-201ENST00000285071 3638 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 LINC00567-201ENST00000569854 3409 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AC004066.1-201ENST00000502488 802 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AC126915.1-201ENST00000522847 1038 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 BAG5-203ENST00000445922 4867 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 RCHY1-201ENST00000324439 4686 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 NBPF3-203ENST00000342104 3704 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 MAN2B1-201ENST00000221363 3170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 ZNF544-213ENST00000599227 3587 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 ZER1-201ENST00000291900 4259 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AC125604.1-201ENST00000496255 707 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 AC106872.11-201ENST00000605838 421 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 SFPQ-201ENST00000357214 3747 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 MICAL2-201ENST00000256194 3906 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 KRT8P4-201ENST00000509735 1454 ntBASIC4.52□□□□□ -1.69
SYNE1Q8NF91 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
SYNE1Q8NF91 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 RIC8B-201ENST00000355478 3207 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 SLC16A6P1-201ENST00000413214 1059 ntBASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 EIF3FP3-201ENST00000434851 1086 ntBASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AC007663.3-201ENST00000609632 465 ntBASIC4.51□□□□□ -1.69
SYNE1Q8NF91 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 PIGG-217ENST00000509768 3121 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 FGD5P1-201ENST00000611158 3374 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AC006504.5-208ENST00000588784 2401 ntBASIC4.51□□□□□ -1.69
SYNE1Q8NF91 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 GRIK1-206ENST00000399913 3234 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms