Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD4P09016 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD4P09016 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD4P09016 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD4P09016 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD4P09016 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXD4P09016 AC008132.1-202ENST00000342005 1389 ntBASIC13.19□□□□□ -0.3
HOXD4P09016 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD4P09016 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD4P09016 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
HOXD4P09016 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD4P09016 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
HOXD4P09016 AL161772.1-201ENST00000610494 4412 ntBASIC13.19□□□□□ -0.3
HOXD4P09016 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
HOXD4P09016 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
HOXD4P09016 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC13.18□□□□□ -0.3
HOXD4P09016 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC13.18□□□□□ -0.3
HOXD4P09016 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 AC023090.2-201ENST00000625182 2110 ntBASIC13.18□□□□□ -0.3
HOXD4P09016 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC13.18□□□□□ -0.3
HOXD4P09016 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.18□□□□□ -0.3
HOXD4P09016 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 BX640514.1-201ENST00000583223 1918 ntBASIC13.18□□□□□ -0.3
HOXD4P09016 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 AC091046.1-201ENST00000331871 207 ntBASIC13.18□□□□□ -0.3
HOXD4P09016 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC13.18□□□□□ -0.3
HOXD4P09016 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
HOXD4P09016 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC13.18□□□□□ -0.3
HOXD4P09016 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC13.18□□□□□ -0.3
HOXD4P09016 LDHBP1-201ENST00000455730 1119 ntBASIC13.18□□□□□ -0.3
HOXD4P09016 CICP12-201ENST00000455801 843 ntBASIC13.18□□□□□ -0.3
HOXD4P09016 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC13.18□□□□□ -0.3
HOXD4P09016 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC13.18□□□□□ -0.3
HOXD4P09016 AC090857.1-201ENST00000527400 390 ntBASIC13.18□□□□□ -0.3
HOXD4P09016 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC13.18□□□□□ -0.3
HOXD4P09016 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC13.18□□□□□ -0.3
HOXD4P09016 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
HOXD4P09016 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
HOXD4P09016 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC13.18□□□□□ -0.3
HOXD4P09016 PAM16-211ENST00000575848 518 ntTSL 3 BASIC13.18□□□□□ -0.3
HOXD4P09016 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
HOXD4P09016 RN7SL574P-201ENST00000581512 297 ntBASIC13.18□□□□□ -0.3
HOXD4P09016 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC13.18□□□□□ -0.3
HOXD4P09016 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC13.18□□□□□ -0.3
HOXD4P09016 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC13.18□□□□□ -0.3
HOXD4P09016 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
HOXD4P09016 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC13.18□□□□□ -0.3
HOXD4P09016 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
HOXD4P09016 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
HOXD4P09016 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC13.18□□□□□ -0.3
HOXD4P09016 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
HOXD4P09016 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HOXD4P09016 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC13.18□□□□□ -0.3
HOXD4P09016 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
HOXD4P09016 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC13.17□□□□□ -0.3
HOXD4P09016 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXD4P09016 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXD4P09016 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXD4P09016 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXD4P09016 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
HOXD4P09016 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
HOXD4P09016 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXD4P09016 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXD4P09016 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXD4P09016 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC13.17□□□□□ -0.3
HOXD4P09016 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
HOXD4P09016 MPV17-204ENST00000399052 749 ntTSL 4 BASIC13.17□□□□□ -0.3
HOXD4P09016 AC007274.2-201ENST00000421675 662 ntBASIC13.17□□□□□ -0.3
HOXD4P09016 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms