Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 RN7SL767P-201ENST00000493013 295 ntBASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC27.01■■□□□ 1.92
SHROOM4Q9ULL8 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC27.01■■□□□ 1.92
SHROOM4Q9ULL8 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC27.01■■□□□ 1.91
SHROOM4Q9ULL8 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 RN7SL564P-201ENST00000496309 250 ntBASIC27■■□□□ 1.91
SHROOM4Q9ULL8 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 EMC4-208ENST00000559078 599 ntTSL 3 BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 NID2-208ENST00000617139 3827 ntTSL 5 BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 WASH7P-201ENST00000488147 1351 ntBASIC27■■□□□ 1.91
SHROOM4Q9ULL8 SNX15-201ENST00000352068 771 ntTSL 5 BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 AC005586.2-201ENST00000563946 837 ntBASIC27■■□□□ 1.91
SHROOM4Q9ULL8 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 AL591471.1-201ENST00000621855 229 ntBASIC27■■□□□ 1.91
SHROOM4Q9ULL8 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC27■■□□□ 1.91
SHROOM4Q9ULL8 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC26.99■■□□□ 1.91
SHROOM4Q9ULL8 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC26.99■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms