Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC17.14■□□□□ 0.33
CTR9Q6PD62 PARVG-202ENST00000415224 999 ntTSL 2 BASIC17.14■□□□□ 0.33
CTR9Q6PD62 AC007274.2-201ENST00000421675 662 ntBASIC17.14■□□□□ 0.33
CTR9Q6PD62 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC17.14■□□□□ 0.33
CTR9Q6PD62 AC012044.1-201ENST00000603431 297 ntBASIC17.14■□□□□ 0.33
CTR9Q6PD62 MIR6769A-201ENST00000617340 73 ntBASIC17.14■□□□□ 0.33
CTR9Q6PD62 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC17.14■□□□□ 0.33
CTR9Q6PD62 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CTR9Q6PD62 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CTR9Q6PD62 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC17.14■□□□□ 0.33
CTR9Q6PD62 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CTR9Q6PD62 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC17.14■□□□□ 0.33
CTR9Q6PD62 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CTR9Q6PD62 AC139749.1-202ENST00000617529 3139 ntBASIC17.14■□□□□ 0.33
CTR9Q6PD62 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CTR9Q6PD62 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTR9Q6PD62 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTR9Q6PD62 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTR9Q6PD62 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTR9Q6PD62 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTR9Q6PD62 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTR9Q6PD62 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTR9Q6PD62 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 AC012617.1-204ENST00000586340 2305 ntBASIC17.13■□□□□ 0.33
CTR9Q6PD62 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 OR2K2-202ENST00000374428 1038 ntBASIC17.13■□□□□ 0.33
CTR9Q6PD62 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTR9Q6PD62 HLA-DQB2-229ENST00000411527 1059 ntBASIC17.13■□□□□ 0.33
CTR9Q6PD62 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTR9Q6PD62 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTR9Q6PD62 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 AC015967.2-201ENST00000624092 234 ntBASIC17.13■□□□□ 0.33
CTR9Q6PD62 AC006435.4-201ENST00000625037 234 ntBASIC17.13■□□□□ 0.33
CTR9Q6PD62 AL356737.1-201ENST00000634391 234 ntBASIC17.13■□□□□ 0.33
CTR9Q6PD62 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTR9Q6PD62 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTR9Q6PD62 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTR9Q6PD62 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTR9Q6PD62 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTR9Q6PD62 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTR9Q6PD62 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTR9Q6PD62 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTR9Q6PD62 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTR9Q6PD62 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC17.13■□□□□ 0.33
CTR9Q6PD62 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTR9Q6PD62 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTR9Q6PD62 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTR9Q6PD62 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTR9Q6PD62 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTR9Q6PD62 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTR9Q6PD62 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTR9Q6PD62 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CTR9Q6PD62 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CTR9Q6PD62 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CTR9Q6PD62 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 CEP164P1-201ENST00000455142 418 ntBASIC17.12■□□□□ 0.33
CTR9Q6PD62 RN7SL258P-201ENST00000478664 300 ntBASIC17.12■□□□□ 0.33
CTR9Q6PD62 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CTR9Q6PD62 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 STUB1-204ENST00000564370 875 ntTSL 2 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 PHBP15-201ENST00000574228 665 ntBASIC17.12■□□□□ 0.33
CTR9Q6PD62 MIR3907-201ENST00000579424 151 ntBASIC17.12■□□□□ 0.33
CTR9Q6PD62 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
CTR9Q6PD62 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTR9Q6PD62 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTR9Q6PD62 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms