Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM4P67936 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TPM4P67936 F10-203ENST00000409306 1450 ntTSL 3 BASIC16.29■□□□□ 0.2
TPM4P67936 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC16.29■□□□□ 0.2
TPM4P67936 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
TPM4P67936 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC16.29■□□□□ 0.2
TPM4P67936 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 USP22-206ENST00000537526 4976 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 SLC46A1-207ENST00000612814 6376 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TPM4P67936 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
TPM4P67936 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC16.28■□□□□ 0.2
TPM4P67936 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 YIPF6-201ENST00000374622 6134 ntTSL 2 BASIC16.28■□□□□ 0.2
TPM4P67936 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC16.28■□□□□ 0.2
TPM4P67936 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 AC064801.2-201ENST00000625052 1303 ntBASIC16.28■□□□□ 0.2
TPM4P67936 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
TPM4P67936 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
TPM4P67936 USP47-202ENST00000339865 7775 ntTSL 2 BASIC16.28■□□□□ 0.2
TPM4P67936 ABI2-202ENST00000261017 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TPM4P67936 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC16.28■□□□□ 0.2
TPM4P67936 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.28■□□□□ 0.2
TPM4P67936 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
TPM4P67936 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
TPM4P67936 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.28■□□□□ 0.2
TPM4P67936 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.28■□□□□ 0.2
TPM4P67936 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC16.28■□□□□ 0.2
TPM4P67936 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.28■□□□□ 0.2
TPM4P67936 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.28■□□□□ 0.2
TPM4P67936 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
TPM4P67936 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.28■□□□□ 0.2
TPM4P67936 AC079781.4-201ENST00000641908 219 ntBASIC16.28■□□□□ 0.2
TPM4P67936 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC16.28■□□□□ 0.2
TPM4P67936 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC16.28■□□□□ 0.2
TPM4P67936 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 SPTBN2-209ENST00000533211 8128 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
TPM4P67936 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC16.28■□□□□ 0.2
TPM4P67936 MAPK10-262ENST00000641051 5738 ntBASIC16.28■□□□□ 0.2
TPM4P67936 INVS-201ENST00000262456 2968 ntTSL 5 BASIC16.28■□□□□ 0.2
TPM4P67936 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
TPM4P67936 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 AL358334.2-201ENST00000553648 4714 ntTSL 2 BASIC16.28■□□□□ 0.2
TPM4P67936 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.28■□□□□ 0.2
TPM4P67936 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM4P67936 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC16.28■□□□□ 0.2
TPM4P67936 AC068760.1-201ENST00000493579 1953 ntBASIC16.27■□□□□ 0.2
TPM4P67936 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
TPM4P67936 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TPM4P67936 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TPM4P67936 ANTXR2-203ENST00000403729 8273 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TPM4P67936 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
TPM4P67936 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC16.27■□□□□ 0.2
TPM4P67936 SLC4A7-203ENST00000425128 7970 ntTSL 5 BASIC16.27■□□□□ 0.2
TPM4P67936 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC16.27■□□□□ 0.2
TPM4P67936 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TPM4P67936 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC16.27■□□□□ 0.2
TPM4P67936 DGKD-202ENST00000409813 6228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TPM4P67936 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
TPM4P67936 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC16.27■□□□□ 0.2
TPM4P67936 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.2
TPM4P67936 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TPM4P67936 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TPM4P67936 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC16.27■□□□□ 0.2
TPM4P67936 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TPM4P67936 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
TPM4P67936 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TPM4P67936 RN7SKP230-201ENST00000365642 335 ntBASIC16.27■□□□□ 0.2
TPM4P67936 USP17L6P-201ENST00000382470 1197 ntBASIC16.27■□□□□ 0.2
TPM4P67936 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
TPM4P67936 AL442647.2-201ENST00000429864 857 ntBASIC16.27■□□□□ 0.2
TPM4P67936 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.27■□□□□ 0.2
TPM4P67936 DNAJB3-202ENST00000449667 1266 ntBASIC16.27■□□□□ 0.2
TPM4P67936 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.27■□□□□ 0.2
TPM4P67936 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.27■□□□□ 0.2
TPM4P67936 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.27■□□□□ 0.2
TPM4P67936 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
TPM4P67936 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.27■□□□□ 0.2
TPM4P67936 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC16.27■□□□□ 0.2
TPM4P67936 KLK3-207ENST00000595952 969 ntTSL 3 BASIC16.27■□□□□ 0.2
TPM4P67936 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
TPM4P67936 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TPM4P67936 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms