Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
VCPP55072 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
VCPP55072 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCPP55072 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
VCPP55072 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.53■□□□□ 0.08
VCPP55072 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
VCPP55072 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC15.53■□□□□ 0.08
VCPP55072 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC15.53■□□□□ 0.08
VCPP55072 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
VCPP55072 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC15.53■□□□□ 0.08
VCPP55072 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC15.53■□□□□ 0.08
VCPP55072 FKBP4P6-201ENST00000457486 1332 ntBASIC15.53■□□□□ 0.08
VCPP55072 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
VCPP55072 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 IDS-203ENST00000428056 1213 ntTSL 2 BASIC15.53■□□□□ 0.08
VCPP55072 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC15.53■□□□□ 0.08
VCPP55072 MARK2P5-201ENST00000507649 634 ntBASIC15.53■□□□□ 0.08
VCPP55072 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
VCPP55072 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC15.53■□□□□ 0.08
VCPP55072 MIR4683-201ENST00000579659 81 ntBASIC15.53■□□□□ 0.08
VCPP55072 RN7SL163P-201ENST00000583100 276 ntBASIC15.53■□□□□ 0.08
VCPP55072 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
VCPP55072 AL603764.1-201ENST00000636452 321 ntBASIC15.53■□□□□ 0.08
VCPP55072 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC15.53■□□□□ 0.08
VCPP55072 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
VCPP55072 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
VCPP55072 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC15.53■□□□□ 0.08
VCPP55072 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC15.53■□□□□ 0.08
VCPP55072 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC15.53■□□□□ 0.08
VCPP55072 AGGF1P1-201ENST00000509500 2073 ntBASIC15.53■□□□□ 0.08
VCPP55072 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
VCPP55072 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.53■□□□□ 0.08
VCPP55072 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC15.53■□□□□ 0.08
VCPP55072 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC15.53■□□□□ 0.08
VCPP55072 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCPP55072 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
VCPP55072 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
VCPP55072 AC020910.5-201ENST00000623668 1865 ntBASIC15.52■□□□□ 0.08
VCPP55072 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.52■□□□□ 0.08
VCPP55072 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
VCPP55072 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
VCPP55072 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
VCPP55072 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
VCPP55072 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
VCPP55072 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC15.52■□□□□ 0.08
VCPP55072 AC009093.2-202ENST00000620513 2079 ntBASIC15.52■□□□□ 0.08
VCPP55072 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VCPP55072 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
VCPP55072 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
VCPP55072 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
VCPP55072 CHMP1AP1-201ENST00000445563 662 ntBASIC15.52■□□□□ 0.08
VCPP55072 RPL18P13-201ENST00000478088 569 ntBASIC15.52■□□□□ 0.08
VCPP55072 AL157792.1-201ENST00000488281 530 ntBASIC15.52■□□□□ 0.08
VCPP55072 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC15.52■□□□□ 0.08
VCPP55072 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
VCPP55072 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
VCPP55072 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC15.52■□□□□ 0.08
VCPP55072 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC15.52■□□□□ 0.08
VCPP55072 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VCPP55072 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.08
VCPP55072 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC15.52■□□□□ 0.08
VCPP55072 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC15.52■□□□□ 0.07
VCPP55072 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
VCPP55072 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
VCPP55072 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
VCPP55072 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
VCPP55072 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC15.52■□□□□ 0.07
VCPP55072 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC15.52■□□□□ 0.07
VCPP55072 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC15.52■□□□□ 0.07
VCPP55072 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
VCPP55072 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
VCPP55072 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
VCPP55072 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC15.52■□□□□ 0.07
VCPP55072 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
VCPP55072 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.52■□□□□ 0.07
VCPP55072 AC092135.3-201ENST00000624151 1846 ntBASIC15.52■□□□□ 0.07
VCPP55072 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
VCPP55072 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.52■□□□□ 0.07
VCPP55072 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms