Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CLK1P49759 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CLK1P49759 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLK1P49759 GALNT16-201ENST00000337827 5708 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLK1P49759 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CLK1P49759 AC016397.2-201ENST00000624848 1985 ntBASIC13.72□□□□□ -0.21
CLK1P49759 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CLK1P49759 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLK1P49759 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLK1P49759 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CLK1P49759 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CLK1P49759 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLK1P49759 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLK1P49759 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.72□□□□□ -0.21
CLK1P49759 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
CLK1P49759 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLK1P49759 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CLK1P49759 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
CLK1P49759 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC13.71□□□□□ -0.21
CLK1P49759 LINC00384-201ENST00000437721 6852 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CLK1P49759 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC13.71□□□□□ -0.21
CLK1P49759 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CLK1P49759 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLK1P49759 TLL2-201ENST00000357947 6756 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLK1P49759 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
CLK1P49759 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLK1P49759 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CLK1P49759 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLK1P49759 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CLK1P49759 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC13.71□□□□□ -0.21
CLK1P49759 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLK1P49759 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
CLK1P49759 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CLK1P49759 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CLK1P49759 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC13.71□□□□□ -0.21
CLK1P49759 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CLK1P49759 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC13.71□□□□□ -0.21
CLK1P49759 AC007389.4-201ENST00000454674 793 ntBASIC13.71□□□□□ -0.21
CLK1P49759 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC13.71□□□□□ -0.21
CLK1P49759 AC093433.1-201ENST00000458048 571 ntBASIC13.71□□□□□ -0.21
CLK1P49759 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC13.71□□□□□ -0.21
CLK1P49759 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC13.71□□□□□ -0.21
CLK1P49759 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
CLK1P49759 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CLK1P49759 PTP4A1P2-201ENST00000546033 454 ntBASIC13.71□□□□□ -0.21
CLK1P49759 AL596325.1-201ENST00000563991 1082 ntBASIC13.71□□□□□ -0.21
CLK1P49759 DUX4L47-201ENST00000566374 394 ntBASIC13.71□□□□□ -0.21
CLK1P49759 PIGL-212ENST00000581006 554 ntTSL 4 BASIC13.71□□□□□ -0.21
CLK1P49759 AC015936.2-201ENST00000593177 259 ntBASIC13.71□□□□□ -0.21
CLK1P49759 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLK1P49759 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
CLK1P49759 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLK1P49759 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLK1P49759 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLK1P49759 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CLK1P49759 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLK1P49759 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CLK1P49759 AL358334.2-201ENST00000553648 4714 ntTSL 2 BASIC13.71□□□□□ -0.22
CLK1P49759 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CLK1P49759 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CLK1P49759 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC13.71□□□□□ -0.22
CLK1P49759 BTBD9-206ENST00000481247 8525 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
CLK1P49759 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.71□□□□□ -0.22
CLK1P49759 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CLK1P49759 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.71□□□□□ -0.22
CLK1P49759 AC092053.3-201ENST00000641308 4975 ntBASIC13.71□□□□□ -0.22
CLK1P49759 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC13.71□□□□□ -0.22
CLK1P49759 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC13.71□□□□□ -0.22
CLK1P49759 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CLK1P49759 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CLK1P49759 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CLK1P49759 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CLK1P49759 TRABD2B-202ENST00000606738 7034 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLK1P49759 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC13.7□□□□□ -0.22
CLK1P49759 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLK1P49759 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CLK1P49759 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC13.7□□□□□ -0.22
CLK1P49759 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLK1P49759 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC13.7□□□□□ -0.22
CLK1P49759 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CLK1P49759 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC13.7□□□□□ -0.22
CLK1P49759 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLK1P49759 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC13.7□□□□□ -0.22
CLK1P49759 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CLK1P49759 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CLK1P49759 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLK1P49759 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC13.7□□□□□ -0.22
CLK1P49759 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
CLK1P49759 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CLK1P49759 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC13.7□□□□□ -0.22
CLK1P49759 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC13.7□□□□□ -0.22
CLK1P49759 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLK1P49759 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC13.7□□□□□ -0.22
CLK1P49759 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
CLK1P49759 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC13.7□□□□□ -0.22
CLK1P49759 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLK1P49759 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLK1P49759 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC13.7□□□□□ -0.22
CLK1P49759 CALY-203ENST00000368558 825 ntTSL 5 BASIC13.7□□□□□ -0.22
CLK1P49759 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 261.3 ms